Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0236 ATGACCGCAGCAACCCGAAAGAGATCATACCCCTACCCCGACGATCCTTCTTCCTCTTCCCCTCCCCCTCATCCATCAACAACCTCCTCCTTCCCTTCCTACCTCGACGCCCCTTCCCTCTCTGCAACCGTGAAATCCGTCTGCCACATCATCGCCACCACCCCCTCCCACTCCGTGGAGCAAGCCCTCCACGACTCCTCCCTGACCGTCACCTCCTCCGACGTCGAGCAGGTCCTCAAGCTCTCCTACTCCTTCCCCGCCCAGGCCGTCAAGTTCTTCCGCTGGTCCGGCCGCCACCTCTCCGACCACCACTCCCCTTACTCCTGGAACCTCGTCGTCGACCTCCTCGGCAAGAACCGCTTCTTCGACGCCATGTGGGACGCCATCAAGTCCATGAAGAAGGAGCGCCTTCTCTCCCTCGCCACCTTCGCCTCCGTCTTCAGCAGCTACGTCTCCGCCGGCAGGCTCCCGGACGCCCTCATGACCTTCGAGGTCATGGGCAACTACGGCTGCGTCAACGACGTCGTCGCCCTCAACTCCCTCCTCAGCGCCGTCTGCCGCGACGCCAGCACCCGCGATGCCAACGAGTTCTTCCGGCTCGCCAAGAAGGTCGTCCGCCCTGACGCCGACACCTACGCCATCCTCATGGAAGGCTGGGAGAGGGAAATGAATATGGATTCCGCCAAGGAGACTTTCGCCGAGATGGTGATTGAAATTGGTTGGGACCCTAACAATGTTCCTGCTTATGATTCTCTCTTGTGTACTTTGATTAAAGGGGATGATGGTATTAGGGAAGCTGTTAGGTTCTTTGATTCCATGAGGGATCGTAGGTGTTACCCTGGGATTAGGTTTTTCAATGTTGCTTTGGATGAGTGTGTTAAGAATCACGATCTTAGGACTGCTGAGTTTTTCTGGGAGGTAATGTTGGGGAGGGTTGGATTGAAGGGTACTACTCAGATGTATAATTCGATGATTGCTTTGTATTGTTATCATAATGATACTGATATCGCGAGGGGGTTGTTGGATGAGATGGTTTTCAGGGGTGCTTTTCCTGATGTGATTACTTATAACTTGCTGTTTAGGTTCTTGATCAAGGGGAGGAAGTTGAGGGATGCCGGGGTGGTGCTCGCGGAGATGGTAAAGAACGAGTTTGTGCCGGAAAAGGCTAATTGCGATGCGGCGGTTAGGATCTATGTCGATGGTGGGGATGCTTTGATGGCCATGAAGGTTTGGAAGTGTATGGTGGCGAATTACCAGGAGGGTTTGGAGGATGCCGCGAATTTGCTTGTCGTGGGGCTTCGCGATCTGAATAGGCTACCGGAAGCTGTTAAGTATGCGGAGGATATGGTTGCCAGAGGGATCAAGTTGACCTCTTCCACGTTGTCTAAGCTGAGGCAGAGCCTTGTCAAAGAGAGGAAACAGTTTGTGTATGAGGATCTTTTGAGAAAGTGGAAATCTCATTAG 1464 0.5369 MTAATRKRSYPYPDDPSSSSPPPHPSTTSSFPSYLDAPSLSATVKSVCHIIATTPSHSVEQALHDSSLTVTSSDVEQVLKLSYSFPAQAVKFFRWSGRHLSDHHSPYSWNLVVDLLGKNRFFDAMWDAIKSMKKERLLSLATFASVFSSYVSAGRLPDALMTFEVMGNYGCVNDVVALNSLLSAVCRDASTRDANEFFRLAKKVVRPDADTYAILMEGWEREMNMDSAKETFAEMVIEIGWDPNNVPAYDSLLCTLIKGDDGIREAVRFFDSMRDRRCYPGIRFFNVALDECVKNHDLRTAEFFWEVMLGRVGLKGTTQMYNSMIALYCYHNDTDIARGLLDEMVFRGAFPDVITYNLLFRFLIKGRKLRDAGVVLAEMVKNEFVPEKANCDAAVRIYVDGGDALMAMKVWKCMVANYQEGLEDAANLLVVGLRDLNRLPEAVKYAEDMVARGIKLTSSTLSKLRQSLVKERKQFVYEDLLRKWKSH* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0236 487 Pfam PPR repeat family 320 362 IPR002885 -
Dod04g0236 487 MobiDBLite consensus disorder prediction 1 31 - -
Dod04g0236 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Dod04g0236 487 Gene3D Tetratricopeptide repeat domain 242 487 IPR011990 GO:0005515
Dod04g0236 487 Gene3D Tetratricopeptide repeat domain 74 241 IPR011990 GO:0005515
Dod04g0236 487 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 18 479 - -
Dod04g0236 487 PANTHER - 18 479 - -
Dod04g0236 487 Pfam PPR repeat 142 171 IPR002885 -
Dod04g0236 487 Pfam PPR repeat 107 136 IPR002885 -
Dod04g0236 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 280 IPR002885 -
Dod04g0236 487 TIGRFAM PPR: pentatricopeptide repeat domain 107 136 IPR002885 -
Dod04g0236 487 TIGRFAM PPR: pentatricopeptide repeat domain 320 353 IPR002885 -
Dod04g0236 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0236 Dod-Chr4 2921281 2924420 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0236 142 483 Glycosyltransferase AT1G05670 23.990 5.25e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0236 - - aip:107633752 767.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0236 04 2921281 2924420 Dod04g0236 04 2921281 2924420 ECH