Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0220 ATGGCTCTGCGTTTTCTTCTACTGCTTTTTGCAATGTCCGTAGTTGCAGCTGATGAAGAACCATTCATTGGAGTGAACATTGGAACAGATCTTTCAGATATGCCTCACCCTACTCAAGTAGTAGCACTGCTTAAAGCACAGCAAATAAAACATGTTCGGTTGTATGATGCTGACCAAGGTATGCTCATTGCACTTGCAAAGACAGGAATCCAAGTTGCTGTGTCTGTCCCAAATGAAGAGCTCCTAGCAATTGGTCAATCAAATTCCACAGCCGCTAACTGGGTTTACCGCAATGTGGTAGCACATTATCCAGCCACTAACATCACATCTATTTGTGTTGGTTCTGAGGTTTTAACGACCCTCCCCAATGCAGCAAAAGTGCTTGTCAATGCTCTTCAGTATGTTCATTCAGCCCTCGTCGCATCGAATCTCCATCGCCAAATCAAAGTTTCAACACCCCTTCCCTCTACCATTATCCTTGATTCATTCCCACCTTCCCAAGCTTTCTTTAACCGCTCGCTGAATCCAGTCTTGGTCCCAATGCTTGATTTCTTGCAATCCACTGGCTCTTATCTCATGCTCAACATATACCCTTATTATGACTACATGCAGTCAAATGGTGTGATTCCATTGGATTATGCACTCTTCAAGCCCCTCCCTCCAAACAAAGAAGCCATTGATTCTAACACCCTTCTCCACTACTCCAATGTGTTTGATGCTGTGGTCGATGCAGTATACTTTGCCATGGCTTTTCTCAATTACACTAACATTCCTGTTGTAGTGACCGAGACAGGCTGGCCCTCAAAAGGTGGCTCTAATGAGCCTGCTGCAACATTAGACAATGCCAATACTTACAACAGCAATCTGATAAAGCATGTGCTGAACATGACTGGAACTCCGAAACATCCTGGAATTGCTGTTAGTACTTACATCTATGAGCTCTACAATGAGGACACAAAGCCAGGACCATTGTCAGAGAAGAATTGGGGGTTGTTTGATGCAAATGGGGCACCTATTTACACGTTGCACCTGACAGGATCAGGAGCAATACTAGCAAATGATACCACCAACCAAACTTACTGCATTGCAAAGGATGGTGCTGATCCAAAGATGTTACAGGCTGGGATAGATTGGGCATGTGGACCTGGCAAGGTTGATTGCTCTCCACTGCTACAGGGAGCACCATGCTATGAGCCAGACAATGTGGTTGCACATGCTAACTATGCTTTTGACACTTACTACCATCAAATGGGAAAGTCTCCCGAGGCATGTAACTTCAATGAAATGGCTACAATCTCCACATCTGATCCAAGTCATGGTCCTTGTATATTTCCAGGAAGCCTTGGCAAGAATGGCACCTTTGGTAACGTTACAGCAGCATCAATGAATTCAACAAGTTCATATTCTTCTGCTTGCAATCTCCATGGATGTGAATTGAGAATTAGAAGCCTTCTTATGGTGATAGGATTTCTGATATGGGGAGTGGTTTTGCTATGA 1497 0.4409 MALRFLLLLFAMSVVAADEEPFIGVNIGTDLSDMPHPTQVVALLKAQQIKHVRLYDADQGMLIALAKTGIQVAVSVPNEELLAIGQSNSTAANWVYRNVVAHYPATNITSICVGSEVLTTLPNAAKVLVNALQYVHSALVASNLHRQIKVSTPLPSTIILDSFPPSQAFFNRSLNPVLVPMLDFLQSTGSYLMLNIYPYYDYMQSNGVIPLDYALFKPLPPNKEAIDSNTLLHYSNVFDAVVDAVYFAMAFLNYTNIPVVVTETGWPSKGGSNEPAATLDNANTYNSNLIKHVLNMTGTPKHPGIAVSTYIYELYNEDTKPGPLSEKNWGLFDANGAPIYTLHLTGSGAILANDTTNQTYCIAKDGADPKMLQAGIDWACGPGKVDCSPLLQGAPCYEPDNVVAHANYAFDTYYHQMGKSPEACNFNEMATISTSDPSHGPCIFPGSLGKNGTFGNVTAASMNSTSSYSSACNLHGCELRIRSLLMVIGFLIWGVVLL* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0220 498 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 2 6 483 - -
Dod04g0220 498 SMART X8_cls 359 444 IPR012946 -
Dod04g0220 498 Gene3D - 353 443 - -
Dod04g0220 498 SUPERFAMILY (Trans)glycosidases 23 343 IPR017853 -
Dod04g0220 498 Pfam X8 domain 360 431 IPR012946 -
Dod04g0220 498 Pfam Glycosyl hydrolases family 17 23 343 IPR000490 GO:0004553|GO:0005975
Dod04g0220 498 ProSitePatterns Glycosyl hydrolases family 17 signature. 257 270 IPR000490 GO:0004553|GO:0005975
Dod04g0220 498 Gene3D Glycosidases 22 348 - -
Dod04g0220 498 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 6 483 IPR044965 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0220 Dod-Chr4 2753490 2757549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0220 17 488 Glycoside Hydrolase AT1G66250 73.418 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0220 K19891 - gmx:100799965 871.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0220 04 2753490 2757549 Dod04g0220 04 2753490 2757549 ECH