Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0098 ATGGCAGGGGCAGCCTCTGCTCTCTTCCTACTTGACATCAAAGGCCGCGTCCTCATTTGGCGCGACTACCGCGGCGATGTCTCCGCCGTCGAGGCCGAGCGCTTCTTCACCAAGCTCATCGAGAAAGAGGGGGATCCGCAGTCTCAAGATCCGGTTGTGTATGATAATGGCGTGACCTATATGTTCATACAGCATAGCAATGTTTACCTCATGACGGCAACAAGGCAAAATTGCAATGCCGCTAGCCTTCTTTTCTTCCTGCATCGCGTAGTTGATGTGTTTAAGCATTATTTTGAAGAATTGGAAGAGGAATCTCTTAGGGATAATTTTGTTGTTGTGTATGAACTACTTGATGAAATTATGGACTTTGGGTACCCCCAATATACCGAGGCTAAGATTCTTAGTGAATTTATCAAGACAGATGCTTATAGAATGGAAGTTATACAGAGACCTCCAATGGCCGTAACAAATGCTGTGTCTTGGCGCAGTGAAGGGATAAACTACAAGAAAAATGAGGTTTTCTTGGATGTCGTGGAGAGTGTGAACATACTTGTCAATAGCAATGGGCAAATAATTAGGTCTGATGTTGTTGGGGCGCTGAAGATGAGAACATATTTGAGTGGTATGCCTGAGTGTAAACTTGGCTTAAATGATAGAGTATTATTAGAGGCACAAGGTAGAGCAACCAAGGGAAAAGCGATTGACTTGGAAGACATCAAATTTCATCAGTGTGTGCGCTTGGCCCGATTCGAGAATGATCGAACAATTTCCTTTATACCGCCTGATGGATCATTTGATTTGATGACATATAGGCTCAGTACACAGGTTAAGCCTTTGATTTGGGTGGAAGCACAAATTGAAAGGCATTCAAAAAGCCGGATTGAGATTATGGTAAAAGCTAGGAGTCAATTTAAGGAACGTAGCACTGCAACAAATGTAGAGATTGAGTTGCCTGTGCCTGCTGATGCAACCAATCCAAATGTGCGGACTTCAATGGGGTCTGCATCATATGCACCTGAGAAAGATGCATTAATTTGGAAAATAAGATCCTTTCCTGGGGGCAAGGAGTACATGTTAAGAGCAGAGTTTCGTCTTCCCAGTATAACAGATGAGGAAGCAACTCCTGAGCGAAAAGCTCCTATACGTGTAAAATTTGAGATACCATATTTTACTGTTTCTGGGATACAGGTTAGATATTTGAAGATTATTGAGAAAAGTGGGTATCAGGCTCTTCCATGGGTGAGGTACATAACAATGGCTGGGGAGTATGAACTGAGGCTTATTTGA 1287 0.4305 MAGAASALFLLDIKGRVLIWRDYRGDVSAVEAERFFTKLIEKEGDPQSQDPVVYDNGVTYMFIQHSNVYLMTATRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEIMDFGYPQYTEAKILSEFIKTDAYRMEVIQRPPMAVTNAVSWRSEGINYKKNEVFLDVVESVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRATKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSKSRIEIMVKARSQFKERSTATNVEIELPVPADATNPNVRTSMGSASYAPEKDALIWKIRSFPGGKEYMLRAEFRLPSITDEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLI* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0098 428 Gene3D Mu homology domain, subdomain B 166 422 - -
Dod04g0098 428 PIRSF AP_complex_mu 146 428 IPR001392 GO:0006886|GO:0016192|GO:0030131
Dod04g0098 428 PIRSF AP_complex_mu 4 154 IPR001392 GO:0006886|GO:0016192|GO:0030131
Dod04g0098 428 CDD AP1_Mu_N 6 145 - -
Dod04g0098 428 CDD AP-1_Mu1_Cterm 156 426 - -
Dod04g0098 428 PANTHER AP COMPLEX SUBUNIT MU 1 427 - -
Dod04g0098 428 ProSitePatterns Clathrin adaptor complexes medium chain signature 2. 256 270 IPR018240 GO:0006886|GO:0016192|GO:0030131
Dod04g0098 428 PRINTS Clathrin coat assembly protein signature 161 189 IPR001392 GO:0006886|GO:0016192|GO:0030131
Dod04g0098 428 PRINTS Clathrin coat assembly protein signature 103 130 IPR001392 GO:0006886|GO:0016192|GO:0030131
Dod04g0098 428 PRINTS Clathrin coat assembly protein signature 15 35 IPR001392 GO:0006886|GO:0016192|GO:0030131
Dod04g0098 428 PRINTS Clathrin coat assembly protein signature 236 263 IPR001392 GO:0006886|GO:0016192|GO:0030131
Dod04g0098 428 PRINTS Clathrin coat assembly protein signature 305 320 IPR001392 GO:0006886|GO:0016192|GO:0030131
Dod04g0098 428 PRINTS Clathrin coat assembly protein signature 345 356 IPR001392 GO:0006886|GO:0016192|GO:0030131
Dod04g0098 428 SUPERFAMILY SNARE-like 6 141 IPR011012 -
Dod04g0098 428 Gene3D - 5 146 - -
Dod04g0098 428 ProSitePatterns Clathrin adaptor complexes medium chain signature 1. 159 179 IPR018240 GO:0006886|GO:0016192|GO:0030131
Dod04g0098 428 Pfam Adaptor complexes medium subunit family 159 426 IPR028565 -
Dod04g0098 428 Pfam Clathrin adaptor complex small chain 7 131 IPR022775 -
Dod04g0098 428 ProSiteProfiles Mu homology domain (MHD) profile. 170 426 IPR028565 -
Dod04g0098 428 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 159 426 IPR036168 -
Dod04g0098 428 PANTHER ASSEMBLY PROTEIN AP47, PUTATIVE-RELATED 1 427 - -
Dod04g0098 428 Gene3D Mu homology domain, subdomain B 278 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0098 Dod-Chr4 1093578 1098426 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0098 K12393 - gmx:100789477 834.328