Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0074 ATGTTCATTCCAAAACTGAAACTCCCCTGCTGCTGTTCCATACAACTCAAGCCTCAACTACGCTCCTCCTTCTTCATCATCAGACCCACGACCACAACAACAACATCCACTTTCATACAAACAACGTTAACACCCTCCAACAATTCCCATGTGTCACTTCCATCTCACTACCCCATTGATGCTGTCTACCTCAAGAACCGCCAACTCCACGCTCTCATAAAATCTAACAATCTCAACTCAGCACTCTCAGTGTTCCACAGCACGCCCCTCCGCGACGCCGTCACCTACAACCTCCTCATTTCCGGGCACGCCACGTGCCATGGCCCACCCGCACGTGCCCTTCGTCTCTACTCCGAAATGGGGTTGCTTGGAATAAGGGAAACCCCAACCACCTTCACATCTGTTGTATCTCTTTGCACCAATCATGGGTTCTTCAGAGAAGCTGTTCAAGTTCATTGCAGGGTGCTCAAGTTCGGATTTTTAGCCAACGTGTTCGTTGGTGGGGCACTCGTTGGTTTCTACATGCATTTGGGGTTAAGGGTGATGGCACTTGAGCTGTTTGATGAGTTGCTGGAGAGAAATTTGGCTGTGTGCAATGTGGTCTTGCGTGGGTTAGTTGAACTGGGTCGTATTGATGATTCATTTGGGTTTTATTACTCTATGATGGGGTTTGAAGATGGGGAGCCAAATGGGGTCACGTTTTGTTATTTGCTTAGGGGGTGTGGTAGCAAGAGATGGTTGCATGAAGGGGAGAAGATTCAAGGAAGGGTTTTGAAGATCGGTTTGATGGAATCCAATGTTTTTGTGGCTAATGCTTTGGTGGATTTTTACTCTGCTTGTGGGTGCTTGGTTGGTGCAAGGAAGTGTTTTGAGGCCATACCGGTTGAGGATGTTATTTCATGGAACTCTTTGGTTTGTGTTTATGCGGAGAATGATTTAGTGTGTGAAGCTTATGAGCTGTTTGCTGTTATGCAAATGTGGGGGAAGAGGCCATCTGTGCGTTCATTGGTGGGGTTTTTGAATTTTTGTAGCAGAAATGAAGACACTGGATTGGGGAAGCAGGTTCACTGTTGCGTTATGAAATTGGGTTTTGATGAAGTCAGTGTGCATATTCAATCTGCTTTGATTGATATGTATGGAAAATGCGGTCACATTGAGAGTTCTGTAGCTGTGTTTGAATGCCTCCCTGAGAGAACCTTGGAGTGTTGCAATTCATTGATGACCTCTCTTTCTTGTTGTGGTGCCACTGAAGATGTGGTGGAATTGTTTGGTTTAATGGTTGATGAAGAAATTAGGCCAGATGAAGTAACCTTCTCCACCACACTAAAAGCATTGTCTTTGTCTGCTTCAGCAAGCTTCACAAGCTCCCAATTACTTCATTGTTTTGTATTAAAATCTGGACTTGAAGGAGATGCTGCAGTTGCATGTTCCCTAATGGATGCGTATTCAAGATCTGGGAATGTGGAGCATTCTCTTAAGATTTTTGAGGCCCTTCCTTCTCCAAATGCTTTTTGTTTCACATCTATGATCAATGGATACTGCCCGAAACGGAATGGGGGAAGAAGGGCTTGCAGTGCTTCAAGCCATGGCTGA 1593 0.4539 MFIPKLKLPCCCSIQLKPQLRSSFFIIRPTTTTTTSTFIQTTLTPSNNSHVSLPSHYPIDAVYLKNRQLHALIKSNNLNSALSVFHSTPLRDAVTYNLLISGHATCHGPPARALRLYSEMGLLGIRETPTTFTSVVSLCTNHGFFREAVQVHCRVLKFGFLANVFVGGALVGFYMHLGLRVMALELFDELLERNLAVCNVVLRGLVELGRIDDSFGFYYSMMGFEDGEPNGVTFCYLLRGCGSKRWLHEGEKIQGRVLKIGLMESNVFVANALVDFYSACGCLVGARKCFEAIPVEDVISWNSLVCVYAENDLVCEAYELFAVMQMWGKRPSVRSLVGFLNFCSRNEDTGLGKQVHCCVMKLGFDEVSVHIQSALIDMYGKCGHIESSVAVFECLPERTLECCNSLMTSLSCCGATEDVVELFGLMVDEEIRPDEVTFSTTLKALSLSASASFTSSQLLHCFVLKSGLEGDAAVACSLMDAYSRSGNVEHSLKIFEALPSPNAFCFTSMINGYCPKRNGGRRACSASSHG* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0074 530 Gene3D Tetratricopeptide repeat domain 247 353 IPR011990 GO:0005515
Dod04g0074 530 Gene3D Tetratricopeptide repeat domain 455 523 IPR011990 GO:0005515
Dod04g0074 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 92 127 IPR002885 -
Dod04g0074 530 TIGRFAM PPR: pentatricopeptide repeat domain 402 435 IPR002885 -
Dod04g0074 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 331 IPR002885 -
Dod04g0074 530 Pfam PPR repeat 373 397 IPR002885 -
Dod04g0074 530 Pfam PPR repeat 299 328 IPR002885 -
Dod04g0074 530 Pfam PPR repeat 402 429 IPR002885 -
Dod04g0074 530 Pfam PPR repeat 131 160 IPR002885 -
Dod04g0074 530 Pfam PPR repeat 477 496 IPR002885 -
Dod04g0074 530 Gene3D Tetratricopeptide repeat domain 64 224 IPR011990 GO:0005515
Dod04g0074 530 Gene3D Tetratricopeptide repeat domain 354 454 IPR011990 GO:0005515
Dod04g0074 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 399 433 IPR002885 -
Dod04g0074 530 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 59 447 - -
Dod04g0074 530 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 184 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0074 Dod-Chr4 816337 817929 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0074 120 518 Glycoside Hydrolase AT3G49170 23.659 5.55e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0074 - - lja:Lj0g3v0314629.1 648.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0074 04 816337 817929 Dod04g0074 04 816337 817929 ECH