Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0071 ATGAGTGGCTTGAGTTTCAGGAGCTTCACATACATGGTTCTCATTGCATTTCTTATTTGGTCTTCCAATTTTGAAGCCTGCATTGCAAGAAGGGGGAAACATTGGAGACAAAATAGAGCTTTCTCATCTTCTCTTATGAAGAAGAAAGGAAAGAATCATGGCAGTGGTCACAATAACCACCATGGTGGAGGATCAAAAACAAAGCCTCCTCCATCATCACCAAAGGCTCCCTCAATACCAAAGTCCCCACCATATAAAAGCAGCCCCTCACCACCACCAAAAGAAGATAACCCCCAAACTCCTCCACCAAAAGGTCACAATGGTGGCTATTCTTCTACCACCTTTAATGTGCTAGATTTTGGAGCAAAGGGAGATGGAAGTACTGATGATACAAAGGCATTCCAATCTGCGTGGGCTGAAGCTTGTAAGGTAGAGGCATCAACCATGCTCGTGCCGGCAGATTACTTCTTCTATGTGGGGCCTATTTCATTCTCGGGCCCATACTGTAAACCCAACATCGTTTTTCAGCTTGATGGTACCATTGTTGCTCCAACAAGCCCCAAAGCATGGGGTGGAGGACTACTACAGTGGCTGGAATTTACAAAGCTGGTGGGAATTACCATTCAAGGAAAAGGTGTCATTGATGGAAGAGGCTCAGTTTGGTGGCAAGACCAACCATTTGATAATCCTATAGATGATGAAGAAAAGCTCATAGTCCCATTAAACCACACAGTAGGAAGGCCACCAATGCCAATTCAAAGTGAGATGCGAGGAAAGATGCCAGGCATTAAGCCAACTGCACTAAGGTTCTATGGGAGTTTTAACCCAACTGTCACGGGCATAACAATTCAGAATAGTCCACAATTTCACCTCAAGTTTGACAACTGCAATGGAGTCTTGGTCCATGATCTGAGCATATCATCTCCCGGTGACAGCCCTAACACTGATGGAATTCACCTTCAGAACTCCAAAGATGTACTGATTTACGGCAGCACTCTTGCTTGTGGAGATGACTGTATTTCTATACAAACCGGGTGTACAAATGTATATGTACACAATGTCAATTGTGGACCAGGGCATGGAATCAGCATTGGAGGTCTAGGAAAGGATAACACCAGAGCCTGTGTATCAAACATTACTGTCAGAGACGTCAACATGCACAACACAATGAATGGTGTCAGAATCAAAACATGGCAGGGTGGATCAGGCTCTGTGCAGGGAGTACTATTCTCAAATATACAAGTTTCTGAAGTTCAACTCCCAATTGTGATTGATCAATTCTACTGCGATAAAAGAACCTGCTCAAACCAAACGTCAGCCGTGGCACTGGCAGGAATCAACTATGAAAGGATAAAGGGGACATACACAGTTAAGCCAGTGCACTTTGCCTGTAGTGATAGCCTGCCATGTGTGGATGTTTCTTTAACCACTATTGAGCTAAAACCAGTTCAAGAACAATACCACCTATATGATCCATTCTGCTGGCAGGCTTATGGTGAATTAAAAACACCAACAGTCCCACCAATTGCTTGTCTACAGATTGGGAAGCCATCAAACAATCGGATTCAGACAGATCATGATTTTTGTTGA 1590 0.4384 MSGLSFRSFTYMVLIAFLIWSSNFEACIARRGKHWRQNRAFSSSLMKKKGKNHGSGHNNHHGGGSKTKPPPSSPKAPSIPKSPPYKSSPSPPPKEDNPQTPPPKGHNGGYSSTTFNVLDFGAKGDGSTDDTKAFQSAWAEACKVEASTMLVPADYFFYVGPISFSGPYCKPNIVFQLDGTIVAPTSPKAWGGGLLQWLEFTKLVGITIQGKGVIDGRGSVWWQDQPFDNPIDDEEKLIVPLNHTVGRPPMPIQSEMRGKMPGIKPTALRFYGSFNPTVTGITIQNSPQFHLKFDNCNGVLVHDLSISSPGDSPNTDGIHLQNSKDVLIYGSTLACGDDCISIQTGCTNVYVHNVNCGPGHGISIGGLGKDNTRACVSNITVRDVNMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKRTCSNQTSAVALAGINYERIKGTYTVKPVHFACSDSLPCVDVSLTTIELKPVQEQYHLYDPFCWQAYGELKTPTVPPIACLQIGKPSNNRIQTDHDFC* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0071 529 MobiDBLite consensus disorder prediction 46 110 - -
Dod04g0071 529 Pfam Pectate lyase superfamily protein 115 139 IPR024535 -
Dod04g0071 529 PANTHER - 6 519 - -
Dod04g0071 529 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 6 519 - -
Dod04g0071 529 Gene3D - 105 521 IPR012334 -
Dod04g0071 529 SUPERFAMILY Pectin lyase-like 112 528 IPR011050 -
Dod04g0071 529 SMART pbh1 296 322 IPR006626 -
Dod04g0071 529 SMART pbh1 273 293 IPR006626 -
Dod04g0071 529 SMART pbh1 323 344 IPR006626 -
Dod04g0071 529 SMART pbh1 405 426 IPR006626 -
Dod04g0071 529 SMART pbh1 346 366 IPR006626 -
Dod04g0071 529 SMART pbh1 376 397 IPR006626 -
Dod04g0071 529 Pfam Glycosyl hydrolases family 28 144 226 IPR000743 GO:0004650|GO:0005975
Dod04g0071 529 Pfam Glycosyl hydrolases family 28 263 481 IPR000743 GO:0004650|GO:0005975
Dod04g0071 529 MobiDBLite consensus disorder prediction 70 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0071 Dod-Chr4 798829 803748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0071 4 529 Glycoside Hydrolase AT1G60590 66.914 0.0 700
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0071 - - gmx:732602 899.042
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0071 04 798829 803748 Dod04g0071 04 798829 803748 ECH