Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0050 ATGGCGGATTCGGCCTCTTCTCCCGCCCCAACCCTAGAACCCAAACCTCAACCCTCCGAATCCGGAGCCCCGAATTCTCACCCAACCCAACCCGATCCTCCATCCACATCTCTATCGCCATCTCCAGCTCCAGCTCCGGCTCCCGCCGCGCCAAACCCTAATCCCAATCCACCTCTGCTCTCCGCCCCACCGCCTCCGCCCCACTCCCACCACCACCCTACCTTCTCCTACGCGCCCCCGCAGGTCTCCGCCGGAGCTTCCTTCGCGCCTCCCGCCGCCCCGTCCTTCAGGCCGCTGCCTCCGCAGTTCTCCCCGCTGCCCAATCCCGCCGGTGCCGCTGCTTCCGCGCCGAACATTGGATACCAGAATCTCTCGGTCCCGCCGCCTGGAGTGAGTTCTGCCGCCGCGGCCTCCGGTGGCGTGGCCATTCGGGCGCCCGTGCCGCCGATGCAGCCGATGATGTCGTACCAGGTTCCTCCCGGACAGCCTGCCATCCCGACACTGAGACCACCGTACGCGCCAATGCCAAACGGTTACGCCGCCGTCCCGGGGGCTCCTCAAGTCACTGTACCTCCTGCCGGAATGCCTCGTTATCCCCCTCCATATGGTACTATGGTACGCCCTGTATATCCTCCACGTGCACCTGGAGCAGTTAATGTTCTTCCAGTATCACGCCCACCTGTTGCCGGGGTCCCTGCAGTTCGTCCTATTATTCCTCCTGTTGTCAGACCTGTGGTTGCTCCAAGTGTTACTCCTGCTGAGAAGCCACAAACCACAGTTTGGGTCGGCAAGATTGCACCAACTGTGGAAAATGATTTTATGCTTTCTATTCTTCAGATATGTGGACCAGTCAAGAGCTGGAAGCGTCCTCAAGACTTATCAAATGGAACTCCTAAAAGCTTTGGCTTTTGTGAGTTTGAGACTGAGGAAGGGGTTCTTCGTGCCTTGCGTCTGCTTACTAAATTGAATATTGATGGGCAAGAGCTCATGCTCAACGTCGATAAAAATATGAAAGAACATCTGGAGCGGTATGTTGTGAAAAAAACTGAAGACTCTAAGAAAAAAGAAACTCAGGTAGCAGGAGCTGAAAAAGATGATGAAAGTGCACAACCTCCTGATGCAGATGGGGATGGGAAATCTGATGCAGAGCAATCAAACAAAGAGGATAAAGACTCAGGCAGAAAGGAATCCCCTGATTTTGCAACCTTTGGCATTGTGACTGATGAAGATAGGGGCACTGATCGCGAAGCTTCAGAAAAGATCGCAAACCTGATAGAAGAGAGGTTGAAGGCAAGACCTGTGCCTACAGCCCCTGCACAGGCAGCTGGCGATGGATCTGCAATAACTTCAGAACAACCAGAAAAAACTAGAGATGGAGATTCTGATGTGGGTATGGGGAGGAATGAGGCAACTGAAGATAAAAATGAGAAAGATACAAACAGTGACATCAAACCAGGTAGTGAACATGATAGACCTGAGACACCTGATAGAAGGCATGATAGGAGAAGCAGAGAGAGAGACCGAGATAGGGAACAAAAACGGGAAAAGGAAAGGGAACTTGAAAGGTATGAAAGAGAAGCAGAGCGAGAACGTATTCGGAAAGAGAGGGAACAAAGGAGGAGGATTGAGGATGCTGAACGTCAGTATGAAGCATGCTTGAAGGAGTGGGAGTATAGAGAGAGAGAGAAAGAGAAAGAACGCCAGTATGAAAAGGACAAGGAAAAAGAAAGAGAACGCAAACGGAGAAAGGAGATACTATACGATGAAGAAGATGAGGATGATGATTCAAGGAAGCGGTGGCGTAGAAGTGTATTAGAGGAGAAGAGAAAGAAGCGACTGCGTGAAAAGGAAGATGACCTGGCTGACAGACAAAAGGAAGAGGAAGAAATTATTGCTGAGGCCAAGAAGAGGGCTGAGGAGGATCAGCAACGGCAACAGCAGAGAGATGCATTGAAACTATTATCTGACCATGTTGTAAATGGTGGTGAAAAAGCTATGGCTATTGAAGAGATTACTAATGAAGTCAAATGTGTTGTTACTGAACACAATACTGCAGCTGATTATAGTCATGAAGGTCATATAGGTGATGCTAATTCACTAAACGCCATCAATGATGAATCAATCATGACTTCTGTCGCTGAAACTGATACACGGTCAAGTGGGGCTGCTCCTGCAAAGAAGTTGGGTTTTGGTCTAGTTGGGTCTGGGAAAAGAACTACCGTCCCCTCTGTTTTCCATGAGGAGGAGGATGACGATGCACACAAGGACAAAAAAATGAGGCCCTTGGTTCCAATTGATTACTCAACTGAGGAACTGCAAGCTGTTCAGCCTACTGCCTCTGGGCCAACGCCACCAAACTTGGCTGCAGCTGCAGAATTTGCAAAGCGTATATCCAATGCCAATCTCAAAGAAGAGAAGTTTGATGGAGAACGGGATCGAAGTAAGCGTTCAAATGAGAAGTCTAGTCACCGTGACAGGGACAGGAGTGATGAAGATGGCACCCACAGCAGAGATGAGCACAAAGAGAAAACTGACCGTGACAGAGATCGAGATCATGGATTGGAGAAACCAAAGACTTCAGATAACAAGAGACTCTTGGACGCAAAACAGTTAATTGACATGATACCAAAGACCAAGGAGGAGTTGTTCTCGTATGAGATAAACTGGGCAGTTTATGACAAGCATCAGTTGCATGAAAGAATGAGACCATGGATTTCAAAGAAAATCAAAGAGTTTTTGGGCGAAGAGGAAAGTACATTGATAGATTACATTGTTTCCAGTACACAAGAACATGTGAAAGCATCCCAGATGCTAGAACGTCTTCAGATCATTTTAGATGAAGAAGCTGAAATGTTCGTACTCAAGATGTGGAGGATGCTTATCTTCGAAATAAAGAAGGTAGAGACGGGGCTTGCTTTGAGGTCAAAATAA 2931 0.4875 MADSASSPAPTLEPKPQPSESGAPNSHPTQPDPPSTSLSPSPAPAPAPAAPNPNPNPPLLSAPPPPPHSHHHPTFSYAPPQVSAGASFAPPAAPSFRPLPPQFSPLPNPAGAAASAPNIGYQNLSVPPPGVSSAAAASGGVAIRAPVPPMQPMMSYQVPPGQPAIPTLRPPYAPMPNGYAAVPGAPQVTVPPAGMPRYPPPYGTMVRPVYPPRAPGAVNVLPVSRPPVAGVPAVRPIIPPVVRPVVAPSVTPAEKPQTTVWVGKIAPTVENDFMLSILQICGPVKSWKRPQDLSNGTPKSFGFCEFETEEGVLRALRLLTKLNIDGQELMLNVDKNMKEHLERYVVKKTEDSKKKETQVAGAEKDDESAQPPDADGDGKSDAEQSNKEDKDSGRKESPDFATFGIVTDEDRGTDREASEKIANLIEERLKARPVPTAPAQAAGDGSAITSEQPEKTRDGDSDVGMGRNEATEDKNEKDTNSDIKPGSEHDRPETPDRRHDRRSRERDRDREQKREKERELERYEREAERERIRKEREQRRRIEDAERQYEACLKEWEYREREKEKERQYEKDKEKERERKRRKEILYDEEDEDDDSRKRWRRSVLEEKRKKRLREKEDDLADRQKEEEEIIAEAKKRAEEDQQRQQQRDALKLLSDHVVNGGEKAMAIEEITNEVKCVVTEHNTAADYSHEGHIGDANSLNAINDESIMTSVAETDTRSSGAAPAKKLGFGLVGSGKRTTVPSVFHEEEDDDAHKDKKMRPLVPIDYSTEELQAVQPTASGPTPPNLAAAAEFAKRISNANLKEEKFDGERDRSKRSNEKSSHRDRDRSDEDGTHSRDEHKEKTDRDRDRDHGLEKPKTSDNKRLLDAKQLIDMIPKTKEELFSYEINWAVYDKHQLHERMRPWISKKIKEFLGEEESTLIDYIVSSTQEHVKASQMLERLQIILDEEAEMFVLKMWRMLIFEIKKVETGLALRSK* 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0050 976 MobiDBLite consensus disorder prediction 93 107 - -
Dod04g0050 976 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 42 976 - -
Dod04g0050 976 MobiDBLite consensus disorder prediction 349 397 - -
Dod04g0050 976 CDD RRM_RBM25 258 341 IPR034268 -
Dod04g0050 976 Coils Coil 610 644 - -
Dod04g0050 976 MobiDBLite consensus disorder prediction 1 112 - -
Dod04g0050 976 MobiDBLite consensus disorder prediction 349 544 - -
Dod04g0050 976 SMART pwi_2 893 966 IPR002483 GO:0006397
Dod04g0050 976 SUPERFAMILY PWI domain 898 964 IPR036483 GO:0006397
Dod04g0050 976 MobiDBLite consensus disorder prediction 27 73 - -
Dod04g0050 976 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 260 329 IPR000504 GO:0003723
Dod04g0050 976 Gene3D - 250 368 IPR012677 -
Dod04g0050 976 Coils Coil 559 579 - -
Dod04g0050 976 Coils Coil 506 555 - -
Dod04g0050 976 MobiDBLite consensus disorder prediction 408 427 - -
Dod04g0050 976 Pfam PWI domain 900 963 IPR002483 GO:0006397
Dod04g0050 976 MobiDBLite consensus disorder prediction 451 544 - -
Dod04g0050 976 MobiDBLite consensus disorder prediction 801 862 - -
Dod04g0050 976 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 258 336 IPR000504 GO:0003723
Dod04g0050 976 PRINTS Proline rich extensin signature 26 42 - -
Dod04g0050 976 PRINTS Proline rich extensin signature 61 82 - -
Dod04g0050 976 PRINTS Proline rich extensin signature 94 110 - -
Dod04g0050 976 PRINTS Proline rich extensin signature 46 58 - -
Dod04g0050 976 PRINTS Proline rich extensin signature 8 20 - -
Dod04g0050 976 MobiDBLite consensus disorder prediction 560 598 - -
Dod04g0050 976 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 42 976 - -
Dod04g0050 976 SUPERFAMILY RNA-binding domain, RBD 244 339 IPR035979 GO:0003676
Dod04g0050 976 ProSiteProfiles PWI domain profile. 880 976 IPR002483 GO:0006397
Dod04g0050 976 SMART rrm1_1 259 332 IPR000504 GO:0003723
Dod04g0050 976 Gene3D PWI domain 856 972 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0050 K12822 - gmx:100809428 1039.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0050 04 588811 595180 Dod04g0050 04 588811 595180 ECH