Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0044 ATGTTTGCCTTTTGTGGCAATACTCATAAGATAAAATCTGGTGGTAATTTTTCAGGAGAGGCACACTCCTTGAAGGTGGAAGAAGTTTTGTTTCAAGGAAAGTCTGAATACCAGAACATCATGGTGTTCAAGTCATCAACATATGGAAAGGTTCTTGTTTTGGATGGAGCCATTCAGCTCACAGAAAGGGACGAATGTGCCTACCAGGAAATGATCACTCATCTTCCTCTTTGCTCCATTCCAAATCCTAAAAAGGTTTTGGTTATTGGTGGAGGAGATGGAGGGGTCCTGCGAGAAGTCTCGCGCCATTCTTCAGTTGAAAAGATAGACATTTGTGAAATTGACAAGATGGTTGTTGATGTCTCCAAACAATTTTTCCCTGATGTAGCAGTAGGGTATAAGGATCCACGTGTGACACTTCATATTGGTGATGGAGTTGCATTTTTGAAGGAAGCTCCACAAGGAACTTATGATGCGGTTATAGTGGATTCATCTGACCCTATTGGTCCTGCTCAAGAGCTTTTTGAGAAGCCCTTTTTCGAGTCGGTTGCAAAGGCTCTTCGACCAGGAGGAGTTATATGTACTCAGGCAGAAAGTATATGGCTCCATATGGATATAATTGAGGACGTTGTGGCCAATTGTCGCCAGATTTTTAAAGGCTCTGTCAACTATGCATGGACCACAGTTCCTACATACCCAAGGTATGTGTTTTTTTGGGCCAATTTTCCTATTCAAAGTACGAAAGTCATGCTCACATGTTATTATTGTTATATTAATTGCACCATGAAATGGTCATTAGACATACATCTGGGATGGCAAGTTGTGTGGTGCATGAATGCATGA 843 0.4152 MFAFCGNTHKIKSGGNFSGEAHSLKVEEVLFQGKSEYQNIMVFKSSTYGKVLVLDGAIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGYKDPRVTLHIGDGVAFLKEAPQGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVICTQAESIWLHMDIIEDVVANCRQIFKGSVNYAWTTVPTYPRYVFFWANFPIQSTKVMLTCYYCYINCTMKWSLDIHLGWQVVWCMNA* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0044 280 Gene3D Spermidine synthase, tetramerisation domain 8 61 IPR037163 -
Dod04g0044 280 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 86 99 IPR030373 -
Dod04g0044 280 PANTHER SPERMIDINE SYNTHASE-RELATED 17 235 - -
Dod04g0044 280 CDD AdoMet_MTases 85 196 - -
Dod04g0044 280 Pfam Spermidine synthase tetramerisation domain 18 62 IPR035246 -
Dod04g0044 280 Pfam Spermine/spermidine synthase domain 65 239 - -
Dod04g0044 280 TIGRFAM speE: spermidine synthase 19 235 IPR001045 GO:0003824
Dod04g0044 280 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 14 244 IPR030374 -
Dod04g0044 280 Hamap Polyamine aminopropyltransferase [speE]. 1 276 IPR001045 GO:0003824
Dod04g0044 280 PANTHER SPERMIDINE/SPERMINE SYNTHASE 17 235 IPR001045 GO:0003824
Dod04g0044 280 Gene3D Vaccinia Virus protein VP39 62 255 IPR029063 -
Dod04g0044 280 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 19 239 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0044 Dod-Chr4 542460 543884 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0044 K00797 - gmx:100776863 408.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0044 04 542460 543884 Dod04g0044 04 542460 543884 ECH