Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0043 ATGGCTCGGGTTTATGTTGGGAACCTGGACCCTCGTGCCTCTGAGAGGGATCTCGAAGATGAATTTCGTTTGTACGGTGTTCTCCGGAGTGTCTGGGTTGCTCGAAGACCACCAGGATATGCTTTTATTGAGTTTGATGATAAGAGGGATGCACTTGATGCAATTCATGCCTTGGATGGTAAAAATGGGTGGCGTGTAGAGCTTTCTCATAATTCTAAGGGTGGTGGAAGCCGTGGTGGGCGTGGGCGTGGGGGTGATGACCTGAAATGCTATGAATGTGGTGAACCTGGGCATTTTGCTCGTGAGTGTCGCTTGCGCATTGGTTCACGAGGGCTAGGAAGTGGAAGGAGACGAAGTCCTAGTCCATATCGTCGTCGTGGGAGTCCAAGTTATGGGTATGGCCGCAGGAGTTATAGCCCTCGTGGGAGGAGATCTCGACGCAGCATAACACCTCCTTATCGTGGTCGCAGCTACAGTAGGTCTCCTCCATACCGACATGCTCGCCGTGATTCACCTTATGCCAATGGAGATTAA 534 0.515 MARVYVGNLDPRASERDLEDEFRLYGVLRSVWVARRPPGYAFIEFDDKRDALDAIHALDGKNGWRVELSHNSKGGGSRGGRGRGGDDLKCYECGEPGHFARECRLRIGSRGLGSGRRRSPSPYRRRGSPSYGYGRRSYSPRGRRSRRSITPPYRGRSYSRSPPYRHARRDSPYANGD* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0043 177 Gene3D - 2 69 IPR012677 -
Dod04g0043 177 Gene3D - 76 131 - -
Dod04g0043 177 SMART c2hcfinal6 89 105 IPR001878 GO:0003676|GO:0008270
Dod04g0043 177 MobiDBLite consensus disorder prediction 67 87 - -
Dod04g0043 177 ProSiteProfiles Zinc finger CCHC-type profile. 89 104 IPR001878 GO:0003676|GO:0008270
Dod04g0043 177 MobiDBLite consensus disorder prediction 110 177 - -
Dod04g0043 177 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
Dod04g0043 177 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Dod04g0043 177 SUPERFAMILY Retrovirus zinc finger-like domains 79 106 IPR036875 GO:0003676|GO:0008270
Dod04g0043 177 Pfam Zinc knuckle 89 104 IPR001878 GO:0003676|GO:0008270
Dod04g0043 177 SMART rrm1_1 3 69 IPR000504 GO:0003723
Dod04g0043 177 MobiDBLite consensus disorder prediction 163 177 - -
Dod04g0043 177 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Dod04g0043 177 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 175 - -
Dod04g0043 177 CDD RRM_SRSF3_like 3 71 - -
Dod04g0043 177 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RSZ21 2 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0043 Dod-Chr4 537075 540862 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0043 K12896 - rcu:8262005 211.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0043 04 537075 540862 Dod04g0043 04 537075 540862 ECH