Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0012 ATGGACCCTCTGCCTCTCAGACACATCCTCCTTCTCTTCCTGATGCTCCTTCCCACCTGCTTCTCTTTCACCTTCCAAACTCCTTCCCACAACAAGGAATGTTCTTCAAATCAAAGCACTTGTTCTCCTTCTTCTTCACTGAAACATCAGATTCTTGAGATAGCCAACAGCCCCAGCACGGTGGAGTGGATGAAGGGTATCAGGAGGGAAATCCATGAGCACCCAGAACTTGCATATGAGGAGTTCAGGACAAGCGCTCTCATCAGGCGCGAGCTTGACCTGTTAGGTGTTGCTTACCAGTGGCCTGTGGCCAAAACTGGTGTGGTTGCCAGAATTGGTTCTAGTTCTCCACCCTTTGTTGCTCTAAGAGCTGACATGGATGCTTTGCCTATTCAGGAACTGGTTGATTGGGATCATAAGAGCAAAGTAGCAGGCAAAATGCATGCTTGTGCACATGATGCACATGTAGCCATGCTCCTTGGGGCTGCCAAGATATTGCAAGAAATGAGAGACAAGTTACAGGCTACTGCTATTCTAATATTCCAACCAGCTGAGGAAAGAGGCGTAGGTGCAAAAGACATGATTCAAGAAAAGGTGCTTGAAGATGTAGGGGCTATTTTTGGGTTGCACTTAGTGCCAGAGTATCCCTTAGGAGTCGTTGCATCACGGCCTGGAGAATTTTTAGCTGGATGTGGAAGCTTCAAAGCAAAGATCAATGGAAAAGGGGGTTCTGCAGGAATCCCCCAGCATTGTTTCGATCCGGTTTTGGCTGCCTCAACATCAGTGATTAGCTTACAAAACATTGTTTCAAGGGAGGCAGATCCTTTAGATTCTCAGGTGCTTTCTGTGGCCATGGTCAATGCAGGGTCTGCTCATGACGTGATCCCCAATTCGGCCACCATTGGAGGCACTTATAGAGCATTCAGCAAAAAGACCTTCTATTCACTAAGGAAAAGGATAGAAGAGGATTTTCATTGGTTTGACTTGTTTGGGCAGGTTATTAAAGGGCAGGCAGAAGTACATAGGTGCAGTGCAGAGGTTGAGTTCTTTGGGAATGAGCATCCCACAATCCCTCCAACTACAAACGATGAGAGAATATATGAACTAGTTAGGCAAGTCTCAAGTAAGATTGTTGGAGAGGGGAACATAGCAGTAGCACCTATCTTCACAGGAAGTGAAGATTTTGCATTTTACTTGGAAAAGGTGCCTGGGTCGTTCCTTCTTGTGGGGATAAGAAATGATAAGAGTGGATCCATATATCCTGCTCATAGTCCTTACTTTGTCATTGATGAAGATGTGCTTCCCACTGGGGCTGCAATACATGCAGCATTTGCTCTTTCATACCATTCCTATTCAACAAATTCTTACATTTAA 1374 0.4549 MDPLPLRHILLLFLMLLPTCFSFTFQTPSHNKECSSNQSTCSPSSSLKHQILEIANSPSTVEWMKGIRREIHEHPELAYEEFRTSALIRRELDLLGVAYQWPVAKTGVVARIGSSSPPFVALRADMDALPIQELVDWDHKSKVAGKMHACAHDAHVAMLLGAAKILQEMRDKLQATAILIFQPAEERGVGAKDMIQEKVLEDVGAIFGLHLVPEYPLGVVASRPGEFLAGCGSFKAKINGKGGSAGIPQHCFDPVLAASTSVISLQNIVSREADPLDSQVLSVAMVNAGSAHDVIPNSATIGGTYRAFSKKTFYSLRKRIEEDFHWFDLFGQVIKGQAEVHRCSAEVEFFGNEHPTIPPTTNDERIYELVRQVSSKIVGEGNIAVAPIFTGSEDFAFYLEKVPGSFLLVGIRNDKSGSIYPAHSPYFVIDEDVLPTGAAIHAAFALSYHSYSTNSYI* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0012 457 Pfam Peptidase family M20/M25/M40 121 445 IPR002933 GO:0016787
Dod04g0012 457 TIGRFAM amidohydrolases: amidohydrolase 65 437 IPR017439 GO:0016787
Dod04g0012 457 CDD M20_IAA_Hyd 64 448 IPR044757 GO:0009850|GO:0016787
Dod04g0012 457 SUPERFAMILY Zn-dependent exopeptidases 60 448 - -
Dod04g0012 457 PANTHER IAA-AMINO ACID HYDROLASE ILR1-LIKE 2 5 455 - -
Dod04g0012 457 SUPERFAMILY Bacterial exopeptidase dimerisation domain 229 358 IPR036264 -
Dod04g0012 457 Gene3D - 229 357 - -
Dod04g0012 457 PIRSF Amidohydrol_AmhX 49 451 IPR017439 GO:0016787
Dod04g0012 457 Gene3D Zn peptidases 66 434 - -
Dod04g0012 457 PANTHER PEPTIDASE M20 FAMILY MEMBER 5 455 IPR017439 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0012 Dod-Chr4 239684 243343 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0012 K14664 - gmx:100780711 730.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0012 04 239684 243343 Dod04g0012 04 239684 243343 ECH