Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3325 ATGTCCATGAGAAGCATCCTTTCGGGCACCAAGCTCATCGCTTCGAATCTCTTCCTACACCACGGAAGAACAACAACAACAACAACATCTCAATTCGCCCAACAATGTAGCAGCAGCAGCAGGCGCAACTACAGCCTGATCCCGATGGTGATCGAGCACTCCTCCCGAGGAGAGAGGGCATACGACATCTTCTCGCGGCTCCTGAAGGAGCGCATCGTCTGCATCAATGGCCCCGTCTCAGACGACACCGCACACGTCGTCGTTGCGCAGCTGCTCTTTCTCGAATCCGAAAACCCTTCCAAGCCCATCCACATGTACCTCAACTCCCCTGGTGGTGCCGTCACTGCAGGCCTGGCAATATATGATACTATGCAGTACATTCGGTCTCCCATTCATACGATCTGTTTGGGTCAAGCTGCATCCATGGGTTCTTTGCTATTGGCTGCAGGTGCCAAGGGTCAGAGGCGTTCTCTCCCGAATGCAACAATCATGATTCATCAGCCTTCAGGAGGTTATAGTGGGCAGGCAAAAGATATTGCTATTCATACCAAGCAGATTGTTCGGGTTTGGGATTCATTGAATGCTATTTATGCAAAGCATACGGGCCAAACAGTTGAGGTTATTCAGAAGAATATGGATAGGGATTATTTTATGACTGCAGAGGAGGCAAAGGAGTTTGGGATTATTGATGAGGTTATTGATCAAAGACCTATGGCTTTGGTTTCTGATGCTGTTGCTAATGAAGGCAAAGATAAAGGTTCTGATTAG 768 0.4857 MSMRSILSGTKLIASNLFLHHGRTTTTTTSQFAQQCSSSSRRNYSLIPMVIEHSSRGERAYDIFSRLLKERIVCINGPVSDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGAVTAGLAIYDTMQYIRSPIHTICLGQAASMGSLLLAAGAKGQRRSLPNATIMIHQPSGGYSGQAKDIAIHTKQIVRVWDSLNAIYAKHTGQTVEVIQKNMDRDYFMTAEEAKEFGIIDEVIDQRPMALVSDAVANEGKDKGSD* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3325 255 Pfam Clp protease 56 235 IPR023562 -
Dod03g3325 255 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 38 254 IPR023562 -
Dod03g3325 255 Gene3D - 32 241 - -
Dod03g3325 255 SUPERFAMILY ClpP/crotonase 54 237 IPR029045 -
Dod03g3325 255 ProSitePatterns Endopeptidase Clp serine active site. 133 144 IPR018215 -
Dod03g3325 255 ProSitePatterns Endopeptidase Clp histidine active site. 155 168 IPR033135 -
Dod03g3325 255 CDD S14_ClpP_2 62 232 IPR001907 GO:0004176|GO:0004252|GO:0006508
Dod03g3325 255 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 38 254 - -
Dod03g3325 255 PRINTS Clp protease catalytic subunit P signature 102 122 IPR001907 GO:0004176|GO:0004252|GO:0006508
Dod03g3325 255 PRINTS Clp protease catalytic subunit P signature 133 150 IPR001907 GO:0004176|GO:0004252|GO:0006508
Dod03g3325 255 PRINTS Clp protease catalytic subunit P signature 211 230 IPR001907 GO:0004176|GO:0004252|GO:0006508
Dod03g3325 255 PRINTS Clp protease catalytic subunit P signature 62 77 IPR001907 GO:0004176|GO:0004252|GO:0006508
Dod03g3325 255 PRINTS Clp protease catalytic subunit P signature 154 173 IPR001907 GO:0004176|GO:0004252|GO:0006508
Dod03g3325 255 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 46 236 IPR001907 GO:0004176|GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3325 Dod-Chr3 65909592 65911791 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3325 K01358 - zju:107435094 399.053