Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3305 ATGGCGACGGAGGGGGGAGGACCTGCCGCTGCGGCCGACGAAGTGAATGTCACTTCGGATACTGCCCAACAAGAAGAACCACCACAAGAAGAAGACGGTGAAGAAGTGGAAGAAGATGGCGAAGAAGAAGAAGAAGGCTATGGAGAAGCCGCAGATGAAGAAGAAGAAGAAGAAGACGAAGACGAGGCCGATGGAGGAGGAGGAGAGGGCGAGTACACTTTCAGGTTCACCAATGACATGAGCCCTCTGGATTTCGTCCACAACAACGACTCCGGCGTCCAACGCTACCAGCAGTTCGAGCGCCTCGAACACGAAGCTCTCGCCGATAGAAAGCGAAAAGGACTCCCTCATTCCCAACCTGAAGGGGAGACTTCTTCTAAGAAGGCAAGGGAAGATGTTGATATTTCTGGGGCAACCATGGCTGAGATAATGGAAGCAATGAATTACGGTGTGCGCAGGAGATCAAGAAAGCCAAAAAAAAGAGGTAGGCGAAAAGGATCAAAGAATAAACTCAGCCCACAAATAATACGAATGCTGGGTGATGCCACGCTTCACTATGCTTGTGGCCGTTATGACCAGGCTATATCTGTCTCATGTGAAGTTGTTAGGCTGGCACCAAATGTACCTGACTCCTATCGCACACTTGCACTTGTCTATAGTTCACTTGAGGATCACAAACGAGCAATGGATTTTTACATGATTGCTGCTCATTTGACTCCAAAAGATTCATATCTTTGGAAAAGGCTTTTTACCTGGTCTATAGGACAAGGTGATGTTGGTCAAGCCAGTTATTGTCTCTCAAAAGCAATAACAGCAGATCCCAAGGACATTAGTCTCAGAACTCATCGTGCAGAGCTTTACGTTGAGCTTGGAGATTATCAAAAGGCTGCTGCAGCATATGAGCAAGTACATCAACTCTGTCGTGAGAAAGTTGATGCACTAAAAGAAGCAGCTAAGTTCTACCAAAAATGTGGTCAAGTTGAATGTGCAGTACGCATTCTCAAAGAATATCTCAGGAGTCAACCAGACGAAGCAAATGCAAGCATAGTTGATCTACTGGCTGCTATATTCATGGAAACTAAGGCACATGACAGAGCTCTTCAGCACATTGAGCAGGCTCAAGTGGTAAATTCAGGAAAAGAATTGCCTCTGAATTTGAAAATTAAAGCTGGAATCTGCCATGTTCATCTTGGAAACATGGAGTTGGCTCAGGTGCTCTTCAATGATTTGAAACCAGAGAATGCAAACAAGCATGTTGACTTGGTCACTGAGGTTGCAGACTCATTAATGGGTCTTGAGCATTATGATTCTGCATTGAATTATTATCTAATGTTGGAAGGAAGTGGAAATGAAAATGGTCCTCTGTATCTGAAAATTGCTAGGTGTTATCTATCCTTGAAAGAAAGGTTACAAGCAATTCACTTTTTTTTCAAAGCCCTAGAAACACTACAAGATGATGTTGATGCACGCATAACTTTGGCTTCCCTTCTGCTTGAAGATGCGAAAGAAGATGAAGCCATTTTCTTGCTGTCTCCTCCAAAGGATTCTGACTTTGGTGAAGCACATTCTGAAAAGTCCAATAGATGGTGGGCTAATGAAAAGATAAAACTGAAGCTCGGCAACATCTATCGGAATAAAGGGATGCTCAATGATTTTGTCAATGCAATTTTCCCTCTGATACGTGAATCACTGTATGTTTCTACTATTCGACAAAAGGGTAAATCAAAGAAGCGCCTCTCCAAACGAGATCTAGTTGAAAGGATTAGGGTACTGAATGATCAGGAAACGGATAATGTATTTCAAGGATTCAGGCCGATAGCTACTCCATCTGACCTGTCGAAAGCTTCAAGGGCAAAAAAGTTGCTCCAGAAGAAGGCAATTGAGAAGGAGAAAAAAAAGGCTGAGGCATTGGCCTCTGGAATTGACTGGCTAAGTGATGATTCAGATGATGAGCCTCAGCAAGTAAACAAAGAACCTCCCTTGCGTAATCTCCTCAACAATGAAGAACATCTCCAGCTAATCATTGATTTGTGCAAGGCATTAGCTTCCTTGCAAAGGTATTGGGAAGCACTGGAGATTATTAATCTTACTTTAAGATTGGCTCATAATGCACTATCTGCTGAGAAGAAAGAGGAGCTTCGATCCCTTGGAGCTCAAATGGCATACAATACCACAGATCCTAAGCATGGATTTGATTGTGTAAAATACATTGTTCAGCAACATCCATATAGTGTTGCAGCTTGGAATTGCTACTACAAGGTTATCTCCAGATTGGAAAATCGAGATACGAGACACTACAAATTTATACGTGCTATGCAAGGAAAATTTGTGGATTGTGTGCCTCCTGTCCTCATTTCTGCTCATCAGTTTACCATATTTAGCCATCACCAAGATGCTGCACGGAAATACCTAGAAGCTTATAAACTTTTACCAGAGAATCCCTTGATCAATCTTTGTGTTGGAACCGCCTTGATCAACTTAGCGTTGGGTTTTAGACTTCAAAATAAACATCAGTGTGTTGTACAAGGTTTAGCATTCCTCTACAACAATTTGAGGGTCTGTGAGAACAGCCAGGAATCCTTGTACAACGTAGCTCGGGCGTTCCATCATGTTGGTCTAGTAACTCTGGCGGCTATCTATTATGAGAGAGTGCTTGCAACTCGTGAGAAAGACTACCCTATTCCAAAACTTCCCAATGAGAATCCAGATATCACGGAAAACCATAACCATATACCTGGTTACTGTGATCTTCGCAGAGAGGCGGCTCACAATCTGCACTTAATCTGTAAGCGGAGTGGTGCTCTTGATCTTGCTAGACAAGTTCTAAAGGATCATTGCTCCTTTTGA 2847 0.4303 MATEGGGPAAAADEVNVTSDTAQQEEPPQEEDGEEVEEDGEEEEEGYGEAADEEEEEEDEDEADGGGGEGEYTFRFTNDMSPLDFVHNNDSGVQRYQQFERLEHEALADRKRKGLPHSQPEGETSSKKAREDVDISGATMAEIMEAMNYGVRRRSRKPKKRGRRKGSKNKLSPQIIRMLGDATLHYACGRYDQAISVSCEVVRLAPNVPDSYRTLALVYSSLEDHKRAMDFYMIAAHLTPKDSYLWKRLFTWSIGQGDVGQASYCLSKAITADPKDISLRTHRAELYVELGDYQKAAAAYEQVHQLCREKVDALKEAAKFYQKCGQVECAVRILKEYLRSQPDEANASIVDLLAAIFMETKAHDRALQHIEQAQVVNSGKELPLNLKIKAGICHVHLGNMELAQVLFNDLKPENANKHVDLVTEVADSLMGLEHYDSALNYYLMLEGSGNENGPLYLKIARCYLSLKERLQAIHFFFKALETLQDDVDARITLASLLLEDAKEDEAIFLLSPPKDSDFGEAHSEKSNRWWANEKIKLKLGNIYRNKGMLNDFVNAIFPLIRESLYVSTIRQKGKSKKRLSKRDLVERIRVLNDQETDNVFQGFRPIATPSDLSKASRAKKLLQKKAIEKEKKKAEALASGIDWLSDDSDDEPQQVNKEPPLRNLLNNEEHLQLIIDLCKALASLQRYWEALEIINLTLRLAHNALSAEKKEELRSLGAQMAYNTTDPKHGFDCVKYIVQQHPYSVAAWNCYYKVISRLENRDTRHYKFIRAMQGKFVDCVPPVLISAHQFTIFSHHQDAARKYLEAYKLLPENPLINLCVGTALINLALGFRLQNKHQCVVQGLAFLYNNLRVCENSQESLYNVARAFHHVGLVTLAAIYYERVLATREKDYPIPKLPNENPDITENHNHIPGYCDLRREAAHNLHLICKRSGALDLARQVLKDHCSF* 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3305 948 Pfam Tetratricopeptide repeat 289 355 - -
Dod03g3305 948 Coils Coil 612 637 - -
Dod03g3305 948 MobiDBLite consensus disorder prediction 25 67 - -
Dod03g3305 948 MobiDBLite consensus disorder prediction 153 170 - -
Dod03g3305 948 MobiDBLite consensus disorder prediction 109 131 - -
Dod03g3305 948 SUPERFAMILY TPR-like 182 346 IPR011990 GO:0005515
Dod03g3305 948 SMART tpr_5 277 310 IPR019734 GO:0005515
Dod03g3305 948 SMART tpr_5 175 208 IPR019734 GO:0005515
Dod03g3305 948 SMART tpr_5 347 380 IPR019734 GO:0005515
Dod03g3305 948 SMART tpr_5 209 242 IPR019734 GO:0005515
Dod03g3305 948 SMART tpr_5 453 486 IPR019734 GO:0005515
Dod03g3305 948 SMART tpr_5 243 276 IPR019734 GO:0005515
Dod03g3305 948 SMART tpr_5 858 891 IPR019734 GO:0005515
Dod03g3305 948 Gene3D Tetratricopeptide repeat domain 165 382 IPR011990 GO:0005515
Dod03g3305 948 Gene3D Tetratricopeptide repeat domain 383 563 IPR011990 GO:0005515
Dod03g3305 948 PANTHER TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 3-RELATED 20 948 IPR039340 GO:0006383
Dod03g3305 948 SUPERFAMILY TPR-like 313 505 IPR011990 GO:0005515
Dod03g3305 948 MobiDBLite consensus disorder prediction 1 88 - -
Dod03g3305 948 ProSiteProfiles TPR repeat profile. 209 242 IPR019734 GO:0005515
Dod03g3305 948 MobiDBLite consensus disorder prediction 146 172 - -
Dod03g3305 948 Gene3D Tetratricopeptide repeat domain 587 945 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3305 Dod-Chr3 65694659 65707743 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3305 K15201 - gmx:100804533 1346.26