Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3304 ATGAGAATAAGAGGATTCTCTGGAGCAGCTGTCTCTCTTCTCGGTAACTGTAATTTCTTAAAGCCGCCACTCAACTCCCTCCTCTTCTTCACTCTTCTCAAACCCTTTTGCGCCGTCGCCTCCTCCTCCTCCTCCTCCGCCGTCAGATCTCCTCCTTCCTCCGTTGCAATGCCAGGTGCTGAGGCGACGCTGAGTGTGGAGTGGCCGGCGAAGCGCGTGAGGGACACCTTCATCAAGTTCTTCGAGGACAAGAGTCATGTCTACTGGAAGTCAAGTCCCGTTGTTCCCTTCAATGACCCAACCCTATTGTTCGCCAACGCTGGCATGAACCAGTACAAGCCAATATTTTTGGGAACTGCTGATCCTAACACTGCCTTGAGCAAGCTCACGCGTGCTTGTAATACCCAGAAGTGCATTCGTGCTGGTGGTAAACACAATGACCTTGATGACGTAGGAAAAGATACCTACCACCACACCTTCTTCGAGATGCTTGGCAATTGGTCTTTTGGGGATTATTTCAAAGAAGAAGCCATTACCTGGGCATGGGAGCTTCTAACAAAAGTTTATAAATTACCAACAGATCGCATTTATGCCACATATTTTGGTGGTGATGAAAATGCTGGTCTTGCCCCTGACACTGAGGCTAGAGATATATGGCTAAAGTTTTTACCTCCTGGACGTGTGCTTCCTTTTGGCTGCAAAGATAATTTCTGGGAGATGGGTGATACTGGTCCTTGTGGACCTTGCACTGAAATACACTTTGACAGAATTGGTAATCGTGAAGCTTCATCATTGGTTAATAATGATGATCCTACATGTATTGAGATATGGAATCTTGTCTTTATTCAGTTCAATAGGGAGGCAGATGGCTCTCTTAAACCCCTTCCTGCAAAGCATGTTGATACAGGCCTGGGTTTCGAACGATTGACGTCTATATTACAGAACAAAATGAGCAATTATGATACTGATGTCTTCTTGCCTATCTTTGATGCTATTCAGTTGGCAACTGGTGCTCGGCCATATTCTGGGAAAGTTGGGCCAGATGATGTAGATAAAGTTGACATGGCATATAGGGTTGTTGCAGATCACATCAGAACTCTGTCATTTGCTATTGCTGATGGGTCTTGTCCTGGTAATGAGGGCCGAGAGTATGTTCTTCGGCGTATACTCCGTCGAGCAGTTCGGTATGGACGCGAAGTGCTGAAAGCTAAGGAGGGGTTCTTTAACGGGCTTGTAAGTGTAGTGGTGAAGGTGATGGGCGATGTTTTCCCTGAGCTAAAACAACAGGAAGTGCGCATCAGGAATGTAATTGAAGAGGAGGAGGAAAGTTTTGGCAGAACTTTACTTAAGGGAATTGAGAAATTTGAGACTGCTGCTCGACATGTTAAGGGAAAGATTCTGAGTGGGGAGGAAGCATTTGTCTTGTGGGATACATATGGGTTCCCATTAGATCTCACTCAGCTGATGGCCGAAGAAAAAGGTTTAGTTGTGGATATCGAAGGTTTTAATAATGCCATGGAAGCTGCAAGAGAGAGATCAAGAAATGCTCAATCAAAGCAAGCTGGCGGTGCCATTGTCATGGATGCTGATGCTACCTCGGCATTGCACAAAAGGGGTGTTGCTACAACTGATGATAGCTTCAAATATGTTTGGTTCAAGGACCACGAGAGTGTGGTGAAAGCAATATATACTGGTTCCGAGTTTGTTGATTCTGTTAATACTGATGATGACATTGGTGTGGTTCTGGAATCTACAAGTTTCTATGCCGAACAAGGTGGTCAGATTTTTGACACTGGATCACTTGAGGGTCCACATGCTTCATTTGAAGTTCGCAATGTACAAGTTTATGGAGGTTTTGTTCTTCACCTTGGTTCCAATGGGAGGGGCATCTCAGTCGGTGACAAAGTAGTATGTAAGGTTGATTATGGAAGGCGTACCCTTATAGCCCCTAACCATACCTGCACACACATTTTAAACTTTGCTCTCAAGGAAGTACTTGGAGATCATGTTGACCAGAAGGGATCCATTGTCCTTCCTGAAAAATTGAGATTTGATTTTTCCCATGGCAAGCCTGTTGATCCTGACAACTTGAGGAGAATTGAGTCAATTGTTAATGAGCAAATTAAAGCCGAATTGGATGTGAGTGCAAAGGAGGTTCCTCTCGCTGAAGCCAAGCGTATCAATGGTTTACGAGCTGTTTTTGGAGAAGTCTATCCTGATCCAGTTAGAGTTATATCAGTTGGACAAAAAGTTGAGGACCTTCTCGATGATCCTGAGAATGAAAAATGGTTATCTATTTCATCAGAATTATGTGGCGGTACCCATTTATCAAACACACGAGAGGCTAAAGCTTTTGCACTTCTATCTGAGGAAGGAATTGCAAAAGGAATCCGCAGAATAACAGCAGTCACAACTGATCGTGCTTATGATGCAATGAAAGTTGCAGACAAATTTGAGCAGCAAGTAGTTGATGCAGATAAATTAGAGGGAAGTTTACTGGAAGAGAAAGTCTCGTATCTGAAAAGCAATGTTGAAACATTGTCCATTCCTGCTGCCAAGAAAGCTGAAATAAAGGCCAAGATAGTCCACCTTCAGGATCGAGTGAGAAAAGCACAAAAGCAAGCTGCTGAGGAAAACAAACGTAAAGCTATAATGATCACAACTGAGAAGGCTGAACTTGCTGCTTCAGAAGGGAAAACATTTTGCGTATCTCATGTTGAAGTTGGTCTGGATGTAACTGCGGTTCGTGAAGCAGTTACAAAAGTCATGGAGCAGAAGGGGATATCTGTGATGGTTTTTAGCACTGACCAATCTACAAACAAGGCTGTTGTTTGTGCCGGGGTGCCAGAGAAAGGTGACAAAGGCAAGCTGGATGTGACAGAGTGGCTGACTAATGCTTTGGAGCCTCTAAAAGGGAGATGTGGCAAGGGAAAAGGTGGTCTTGCAACAGGACAGGGTACAGATGCATCACATGTAAATGATGCTATGGATCTTGCAGTAACATTTGCATCAATGAAATTGATTTAA 3027 0.4407 MRIRGFSGAAVSLLGNCNFLKPPLNSLLFFTLLKPFCAVASSSSSSAVRSPPSSVAMPGAEATLSVEWPAKRVRDTFIKFFEDKSHVYWKSSPVVPFNDPTLLFANAGMNQYKPIFLGTADPNTALSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAITWAWELLTKVYKLPTDRIYATYFGGDENAGLAPDTEARDIWLKFLPPGRVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGNREASSLVNNDDPTCIEIWNLVFIQFNREADGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFLPIFDAIQLATGARPYSGKVGPDDVDKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGREVLKAKEGFFNGLVSVVVKVMGDVFPELKQQEVRIRNVIEEEEESFGRTLLKGIEKFETAARHVKGKILSGEEAFVLWDTYGFPLDLTQLMAEEKGLVVDIEGFNNAMEAARERSRNAQSKQAGGAIVMDADATSALHKRGVATTDDSFKYVWFKDHESVVKAIYTGSEFVDSVNTDDDIGVVLESTSFYAEQGGQIFDTGSLEGPHASFEVRNVQVYGGFVLHLGSNGRGISVGDKVVCKVDYGRRTLIAPNHTCTHILNFALKEVLGDHVDQKGSIVLPEKLRFDFSHGKPVDPDNLRRIESIVNEQIKAELDVSAKEVPLAEAKRINGLRAVFGEVYPDPVRVISVGQKVEDLLDDPENEKWLSISSELCGGTHLSNTREAKAFALLSEEGIAKGIRRITAVTTDRAYDAMKVADKFEQQVVDADKLEGSLLEEKVSYLKSNVETLSIPAAKKAEIKAKIVHLQDRVRKAQKQAAEENKRKAIMITTEKAELAASEGKTFCVSHVEVGLDVTAVREAVTKVMEQKGISVMVFSTDQSTNKAVVCAGVPEKGDKGKLDVTEWLTNALEPLKGRCGKGKGGLATGQGTDASHVNDAMDLAVTFASMKLI* 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3304 1008 Gene3D - 894 1002 - -
Dod03g3304 1008 SUPERFAMILY Class II aaRS and biotin synthetases 70 320 IPR045864 -
Dod03g3304 1008 CDD AlaRS_core 70 316 - -
Dod03g3304 1008 Gene3D - 542 640 - -
Dod03g3304 1008 PRINTS Alanyl-tRNA synthetase signature 274 285 IPR002318 GO:0000166|GO:0005737
Dod03g3304 1008 PRINTS Alanyl-tRNA synthetase signature 382 395 IPR002318 GO:0000166|GO:0005737
Dod03g3304 1008 PRINTS Alanyl-tRNA synthetase signature 146 157 IPR002318 GO:0000166|GO:0005737
Dod03g3304 1008 PRINTS Alanyl-tRNA synthetase signature 358 374 IPR002318 GO:0000166|GO:0005737
Dod03g3304 1008 PRINTS Alanyl-tRNA synthetase signature 301 314 IPR002318 GO:0000166|GO:0005737
Dod03g3304 1008 TIGRFAM alaS: alanine--tRNA ligase 73 985 IPR002318 GO:0000166|GO:0005737
Dod03g3304 1008 Pfam DHHA1 domain 864 1000 IPR003156 GO:0003676
Dod03g3304 1008 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 742 800 IPR012947 GO:0004812|GO:0005524|GO:0043039
Dod03g3304 1008 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 321 520 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Dod03g3304 1008 Coils Coil 854 881 - -
Dod03g3304 1008 Hamap Alanine--tRNA ligase [alaS]. 68 1007 IPR023033 GO:0004813
Dod03g3304 1008 SMART tRNA_SAD_4 742 801 IPR012947 GO:0004812|GO:0005524|GO:0043039
Dod03g3304 1008 Gene3D Bira Bifunctional Protein; Domain 2 69 317 IPR045864 -
Dod03g3304 1008 PANTHER ALANYL-TRNA SYNTHETASE 43 1007 - -
Dod03g3304 1008 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 68 814 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Dod03g3304 1008 SUPERFAMILY Translation proteins 567 640 IPR009000 -
Dod03g3304 1008 Pfam tRNA synthetases class II (A) 73 642 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Dod03g3304 1008 PANTHER BNACNNG61840D PROTEIN 43 1007 - -
Dod03g3304 1008 Gene3D - 641 818 - -
Dod03g3304 1008 Coils Coil 499 519 - -
Dod03g3304 1008 SUPERFAMILY ThrRS/AlaRS common domain 640 816 IPR018163 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3304 Dod-Chr3 65679218 65691001 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3304 K01872 - gmx:100788271 1689.86