Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3286 ATGGCAAGCCATCATGGGAAGATTGCTCCCTCGAACGGGTCTGTCTATGTCTGCAACTTGCCTTTCGGGACTGATGAAAATATGCTAGCTGAGTATTTTGGCACCATTGGTTTAATCAAGAAAGATAAACGGACTGGGAGACCAAAAATATGGTTTTATCGAGACAAAGAGACTAATGAACCAAAGGGAGATGCTACTGTAACGTATGAGGATCCACATGCCGCTGCAGCTGCTGTTGAATGGTTTAACAACAAAGATTTTCATGGTAATACAATTGGAGTTCACATAGCAGAGTCAAAAAACAAGGATGAACAGGCATATAATCCAGTGGCAGAACCGGCTGTTACTGGTAATGTTGGGGGACTAGAGGAAACTGTTAGGGATGTTAATGGGGGTAGTGGAAGAGGTAGAGGTCAAAATGATTCTTCAGGCAAAGCATGGCAACAAGAGGGCGATTGGTTGTGTCCGAATACCAGTTGCTCCAATTGGAATTTTGCTTTTCGTGGTGCGTGTAATCTCTGTGGAAGTGCTCGTCCAGCTGGTGCTGCTGGTGTTGCAGGGGCTGGTGGCCGTGGCAAGGGACGTGCTGCACAAGATGCAGCGGGTATTGGCCGTCCAGCTGGTGGAGGACTTTTTGGTCCAAATGATTGGCCTTGTCCAATGTGTGGTAATATCAATTGGGCAAAGAGGACTAAGTGCAATATTTGCAATACAAATAAGCCTGGTCATAACGAGGGTGGTGTAAGAGGAGGGCGAGGTGGAGGCTACAAAGAGCTTGATGAAGAGGAAATAGAGGAAACTAAACGTCGTAGGCGGGAGGCTGAAGATGATGGGGAGTTGTATGATGAATTTGGAAATCTTAAGAAGAAATTCCGTGCCAAAACACAGCAAGCTGAAGCTGCACGAGTGCTTCCTGGTTCAGGGCGTGCTGGGTGGGAAGTTGAGGATCTAGGGATTGACAGGGATGCTAGAGAAAGAAGTAGAGACAGAGGAAGAGATCGTAGCGATGGGGAGACCAGGAGCAGGGAGCGAAGTGAAAAAGAGAGAGCGAGCAGTCGGAACAGAGAGAGGAACAGGGGAAGAGATCGCGACTGGGATTATGACGATCGTGATAGAGATTATGGGCGAGATCGGGACCGGAGTAGGCATCGTTATTGA 1158 0.4784 MASHHGKIAPSNGSVYVCNLPFGTDENMLAEYFGTIGLIKKDKRTGRPKIWFYRDKETNEPKGDATVTYEDPHAAAAAVEWFNNKDFHGNTIGVHIAESKNKDEQAYNPVAEPAVTGNVGGLEETVRDVNGGSGRGRGQNDSSGKAWQQEGDWLCPNTSCSNWNFAFRGACNLCGSARPAGAAGVAGAGGRGKGRAAQDAAGIGRPAGGGLFGPNDWPCPMCGNINWAKRTKCNICNTNKPGHNEGGVRGGRGGGYKELDEEEIEETKRRRREAEDDGELYDEFGNLKKKFRAKTQQAEAARVLPGSGRAGWEVEDLGIDRDARERSRDRGRDRSDGETRSRERSEKERASSRNRERNRGRDRDWDYDDRDRDYGRDRDRSRHRY* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3286 385 MobiDBLite consensus disorder prediction 126 148 - -
Dod03g3286 385 SUPERFAMILY RNA-binding domain, RBD 11 102 IPR035979 GO:0003676
Dod03g3286 385 SMART rrm1_1 14 95 IPR000504 GO:0003723
Dod03g3286 385 ProSitePatterns Zinc finger RanBP2-type signature. 153 174 IPR001876 -
Dod03g3286 385 MobiDBLite consensus disorder prediction 311 385 - -
Dod03g3286 385 MobiDBLite consensus disorder prediction 314 385 - -
Dod03g3286 385 ProSitePatterns Zinc finger RanBP2-type signature. 217 236 IPR001876 -
Dod03g3286 385 ProSiteProfiles Zinc finger RanBP2 type profile. 213 242 IPR001876 -
Dod03g3286 385 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 99 IPR000504 GO:0003723
Dod03g3286 385 CDD RRM_SARFH 15 97 - -
Dod03g3286 385 SUPERFAMILY Ran binding protein zinc finger-like 142 181 IPR036443 -
Dod03g3286 385 Gene3D - 12 95 IPR012677 -
Dod03g3286 385 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 15 1 385 - -
Dod03g3286 385 Pfam Zn-finger in Ran binding protein and others 150 179 IPR001876 -
Dod03g3286 385 Pfam Zn-finger in Ran binding protein and others 216 242 IPR001876 -
Dod03g3286 385 ProSiteProfiles Zinc finger RanBP2 type profile. 149 180 IPR001876 -
Dod03g3286 385 PANTHER ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED 1 385 - -
Dod03g3286 385 MobiDBLite consensus disorder prediction 254 277 - -
Dod03g3286 385 MobiDBLite consensus disorder prediction 242 277 - -
Dod03g3286 385 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 92 IPR000504 GO:0003723
Dod03g3286 385 SUPERFAMILY Ran binding protein zinc finger-like 207 243 IPR036443 -
Dod03g3286 385 Coils Coil 257 277 - -
Dod03g3286 385 SMART zf_4 151 177 IPR001876 -
Dod03g3286 385 SMART zf_4 215 239 IPR001876 -
Dod03g3286 385 Gene3D - 145 182 - -
Dod03g3286 385 Gene3D - 212 243 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3286 - - aip:107628735 549.28