Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3268 ATGCCACCACCTCTCTCGTTCCCCATCACCCTTAAGCTCAGCAAGCGCTTCGAATCCCTCAAGCTCTGCATCGTCAAGTCCCTTCTCCTCAATGCCCCTTCCCTCAACGACGCCGTTTCATCCCTCGACCTCTTCCACCCTCGCGGCATTCGCTTACCCTCCCGCGTCTTCGCCACCCTCCTCCGCCACTGCTCCGAAGCTAGCTCCCACCGCGAGGGCAAACTGGTCCATTTACATCTCAAGCTCACCGGTTTCAAACGCCCCACCACTTTCGTCGCCAACCATTTGATCGCTATGTATTTCAGTTGCGGTGATTACGTTAACGCCCGCAAGGTGTTCGACAAAATGGAGGTGAGAAATTTGTATTCGTGGAACAATATGCTTTCTGGGTATGTTAAATTGGGCATGATGAAGCAGGCAAGGAACTTGTTTGATAAAATGCCTGAGAGGGATTTCGTGTCTTGGAATACTATGGTTGTTGGGTATGCGCGTAATGGGGTGTTTGGTGAGGCTTTGAGGTTTTATGTGGAGTTGAGGAGGCTGTGTATTGGGTATAATGGGTTTAGCTTTGCGAGTGTGTTGATTGTTTGTGTGAAGTTGAAGGATTTTAGGATTTCTAGGCAGGTTCATGGGCAGGTTTTGGTTGTTGGGTTTTTATCCAATGTGGTGGTATCGAGCTCGATTGTTGATGCTTATGCAAAGTGTGGAAAGATGGAGGATGCGAGGAGGTTGTTTGATGAGATGCCTGTGAGGGATATCCCTGCTTGGACGACATTGGTCTCAGGTTATGCTGCATCGGGGGACATGGAATCAGCAGCTGAAGTTTTTAATCAGATGCCACTGAAAAATTCTTATTCATGGACATGTTTGATTAGTGGTTATGCTAGAAATGGTATGGGTTATGAGGCACTTGGAGTGTTTGTGAAGATGACTGAGCATGGAGTTAGGCCTGATCAGTTTACATTCAGTAGTTGCCTCTATGCTTGTGCTGTTATTACTTCGTTGAAGCATGGTAAACAAATACATGCATTTTTGGTGCGACATAACATAAGACCTAATGCTATTGTTGTTAGTGCTATTGTTGACATGTATTCAAAATGTGGATGCATGGAAGCCGCCAAGCGAGTATTTAACTTCATTGGAAATAAGCAAGATGTTGTGTTGTGGAACACGATGATATCCGCGCTGGCTCACTATGGATGTGGTATAGAGGCAATTATGATGCTAAATGATATGCTTAGATCAGGAGTGAAGCCAAATAGGGCCACCTTTCTTGTCATGCTAAATGCTTGCAGTCATTCAGGTCTTGGGCAGGAAGGGTTTCAGTTTTTCATGTCCATGAATAGTGAGCATGGTTTTGTTCCAGACCAAGAACACTACGCATCCCTAATTGATCTTTTGGGTCGAGCTGGTGGATGCTTTAATGAATCAGGGAATGATCTACAGATGAAGGATTGTAAGCCGGGTGAGAATGTTGGGAATTCTTTGCTTGGCGCATGTAGAATGCATGAAAATATAGCACTTGAAGGAGAAGTACCTGAATTCCCCGTCAAATTGCAGCCCCAATCCTCTGCTGCGTACCTATTACTTCCAAGTATTTTTGCTGCACTTGTGAAAAGGGGATTGGCTGAGAAAGTGAGACAGATTATGGACAAGCGATGTGTGAGTTAA 1671 0.4542 MPPPLSFPITLKLSKRFESLKLCIVKSLLLNAPSLNDAVSSLDLFHPRGIRLPSRVFATLLRHCSEASSHREGKLVHLHLKLTGFKRPTTFVANHLIAMYFSCGDYVNARKVFDKMEVRNLYSWNNMLSGYVKLGMMKQARNLFDKMPERDFVSWNTMVVGYARNGVFGEALRFYVELRRLCIGYNGFSFASVLIVCVKLKDFRISRQVHGQVLVVGFLSNVVVSSSIVDAYAKCGKMEDARRLFDEMPVRDIPAWTTLVSGYAASGDMESAAEVFNQMPLKNSYSWTCLISGYARNGMGYEALGVFVKMTEHGVRPDQFTFSSCLYACAVITSLKHGKQIHAFLVRHNIRPNAIVVSAIVDMYSKCGCMEAAKRVFNFIGNKQDVVLWNTMISALAHYGCGIEAIMMLNDMLRSGVKPNRATFLVMLNACSHSGLGQEGFQFFMSMNSEHGFVPDQEHYASLIDLLGRAGGCFNESGNDLQMKDCKPGENVGNSLLGACRMHENIALEGEVPEFPVKLQPQSSAAYLLLPSIFAALVKRGLAEKVRQIMDKRCVS* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3268 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Dod03g3268 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 120 154 IPR002885 -
Dod03g3268 556 TIGRFAM PPR: pentatricopeptide repeat domain 153 180 IPR002885 -
Dod03g3268 556 TIGRFAM PPR: pentatricopeptide repeat domain 285 318 IPR002885 -
Dod03g3268 556 TIGRFAM PPR: pentatricopeptide repeat domain 387 420 IPR002885 -
Dod03g3268 556 TIGRFAM PPR: pentatricopeptide repeat domain 227 253 IPR002885 -
Dod03g3268 556 TIGRFAM PPR: pentatricopeptide repeat domain 423 456 IPR002885 -
Dod03g3268 556 TIGRFAM PPR: pentatricopeptide repeat domain 255 279 IPR002885 -
Dod03g3268 556 TIGRFAM PPR: pentatricopeptide repeat domain 122 153 IPR002885 -
Dod03g3268 556 Pfam PPR repeat family 282 330 IPR002885 -
Dod03g3268 556 Pfam PPR repeat family 385 432 IPR002885 -
Dod03g3268 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 221 255 IPR002885 -
Dod03g3268 556 Gene3D Tetratricopeptide repeat domain 333 514 IPR011990 GO:0005515
Dod03g3268 556 Gene3D Tetratricopeptide repeat domain 202 332 IPR011990 GO:0005515
Dod03g3268 556 Pfam PPR repeat 94 120 IPR002885 -
Dod03g3268 556 Pfam PPR repeat 153 181 IPR002885 -
Dod03g3268 556 Pfam PPR repeat 226 252 IPR002885 -
Dod03g3268 556 Pfam PPR repeat 255 281 IPR002885 -
Dod03g3268 556 Pfam PPR repeat 358 378 IPR002885 -
Dod03g3268 556 Pfam PPR repeat 122 151 IPR002885 -
Dod03g3268 556 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Dod03g3268 556 Gene3D Tetratricopeptide repeat domain 28 183 IPR011990 GO:0005515
Dod03g3268 556 PANTHER - 129 281 - -
Dod03g3268 556 PANTHER - 33 140 - -
Dod03g3268 556 PANTHER - 257 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3268 Dod-Chr3 65372065 65374560 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3268 135 553 Glycoside Hydrolase AT3G49170 31.915 1.47e-66 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3268 - - lja:Lj3g3v3500060.1 751.51