Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3246 ATGGAAACTCGGAGCCGGAAGCGGGCGGAGGCTTCCTCAGCTGCCCCTTCATCTTCCTCCTCTGGTCCCACCACCCGTTCCAGCAACAAGCGCGCCCGCCTCAACAACAACAACAACACCTCTTCCTCCTCTTCTTCTTCCGCAACCGCCGTAACAGCCTCAGCAACCGCTACAACCATCACCACTCGCTCCCGCGCATCTCGTTCCGCCAACAAGGACTCTCTCCCGCCTAAGAACCCTCCTCCCCTTCCTCCTGCTCCGATGGACTCTACCAACGAATCCTCCGGCTCGCGGCGCAACCGAGGGAAGAATTCCGATAGGGAGAACTCCGACAAAGGGAAAGAAAAGGAGCACGATGTTAGGGTTAGGGATAGGGATTCTGAGAGGGGACTGGCTTTGAACATGGAGAGTGGCGGTGGTGTTGGCGGCGATGACGATGATAACGATAGCGAGGGCGGCGTTGGGATTCTGCATCAGAATCTGACGTCGGCGAGCAGTGCCCTTCAGGGGCTTCTTCGGAAACTTGGCGCCGGACTTGACGATCTGCTTCCGTCGTCGGCAATGGGTTCTTCGTCGGCGTCTCATCAGAGCGGAAGGTTGAAGAAGATCCTGTTTGGGCTTCGGGCTGACGGGGAAGAAGGGAGACAGGTTGAGGCATTGACGCAGCTTTGTGAGATGCTGTCGATTGGGACTGAGGAATCGCTGAGCACGTTCTCTGTTGATTCGTTTGTTCCTGTGCTTGTGGGGTTGTTGAATCATGAGAGTAATCCTGATATCATGCTTCTTGCTGCAAGGGCGCTTACACATCTCTGTGATGTGTTGCCTTCTTCTTGTGCTGCTGTTGTGCACTATGGTGCTGTGTCTATCTTCTGCGCGAGGTTGCTTACCATAGAGTACATGGACTTAGCTGAGCAGTCTCTTCAAGCACTAAAGAAGATATCTCAGGAGCACCCAACTGCCTGCCTTCGAGCTGGTGCTCTTATGGCTGTGCTTTCTTATTTGGACTTCTTTTCCACAGGTGTTCAGCGGGTGGCATTGTCTACAGCTGCAAATATGTGCAAGAAGCTTCCTTCAGATGCGGCTGACTTAGTGATGGAAGCCGTTCCTCTTTTGACAAACCTCCTTCAGTACCATGATTCAAAGGTCCTGGAGCATGCCTCTGTGTGTTTGACCCGAATAGCTGAAGCATTTGCATCATCTCCAGACAAATTAGATGAATTGTGCAATCATGGACTAGTAACACAAGCAGCCTCTCTCATTTCAACCAGCAGTTCTGGTGGTGGACAGGCTTCTCTCAGCACATCAACATATACTGGTTTAATCCGGCTTCTTTCAACTTGCGCAAGTGGGTCCCCTCTTGGAGCGAAAACTTTACTTCTCCTCGGAATTAGCGGCATTCTTAAAGATATTCTGTCTGGCTCTGGAGTTTCATCTAATGCTTCTGTTTCTCCTGCATTAAGTAGGCCACCAGACCAGATATTTGAGATTGTGAACCTTGCAAACGAGCTTCTACCCCCACTGCCCCAAGGGATAATTTCCCTCCCCGTCAGTAGCAACTTGTTTGTGAAAGGGCCTGTCATAAGAAAGTCTCCTGCTGGCAGTTCTGGGAAACAGGAAGACACAAATGGAAATGTTCCTGAGATATCTGCTCGTGAGAAACTATTGAATGATCAGCCTGAGTTACTTCAGCAATTTGCGATGGATCTCCTTCCAGTTTTAGTACAGATTTATGGTTCTAGTGTTAATGGTCCTGTCCGGCATAAATGTCTTTCCGTCATTGGAAAACTGATGTATTTCAGCACAGCAGGGATGATCCAGTCTTTGTTGACTGTGACAAATATATCTAGTTTCTTAGCTGGCGTCTTAGCCTGGAAAGATCCACATGTTTTGGTTCCTGCTCTGCAAATTGCTGAAATTCTTATGGAAAAACTTCCTGGGACATTTTCTAAGATGTTTATCAGAGAAGGTGTTGTCCATGCAGTGGACCAACTTGTTTTTGCTGGAAATTCCACCAGTGTCCCCGCACAAGCGGCTTCTGCTGAGAAGGATAATGATTCTGTATCTGGAACATCATCTCGCTCCAGGCGTTATCGACGACGCAGTGGTAACAACAATCCTGACGGGAATCCTTTGGATGATTTGAAGAGTCCAGCCTCAGTAAATGTTGGTTCTCCTCCAAGTTCTGCGGATATTCCAACAGTTAATTCCAGTATACGGTTATCTGTATGCACAGCTGCTAGAGCTTTTAAAGATAAGTACTTTCCTTCTGATCCTGGGGCTGTTGAAGTTGGTGTTACTGATGATCTGTTGCGTCTGAAAAATCTTTGCATGAAGTTAAATGCTGGTGTTGATGACCAAAAGTCTAATGGAAAGGGGAAATCTAAAACTTCAGGATTCGTTCTGGAAGAGATTTCTGCTAATAAGGAAGAGTACTTGATTGGGGTAATATCTGACATGCTTAAGGAACTGGGTAAAGGAGATGGGGTATCTACTTTTGAATTTATTGGTAGTGGTGTTGTTGCTGCCTTGCTCAATTATTTTTCTTGTGGATATTTCTCCAAAGATCGAACCCCTGAGACCAACCTGCCCAAGCTTCGTCAGCAAGCACTCACGAGGTTTAAGTTATTTATAGCTGTTTCACTTCCTACCAGTACAGATGATGGGGCCGTGGCTCCAATGACTGTCTTGGTCCAGAAGCTTCAAAATGCTTTGTCCTCCTTAGAGCGTTTCCCTGTTGTGCTGAGTCATTCAGCTAGGTCATCCAGTGGAAGTGCACGCCTCTCCTCTGGATTAAGTGCATTATCTCAGCCCTTTAAGTTGCGTCTCTGTAGAGCCCAGGGTGAAAAGTCACTTAGGGATTATTCTTCCAATGTTGTGCTGATTGATCCATTAGCAAGTTTAGCAGCTATTGAAGAATTTCTTTGGCCCCGTATCCAGCGAAGTGAATCTGGTCAGAAGTCGACTGTGCCTGCTGGGAATTCTGAATCTGGCACAACTCCTGCTGCAGCTGGGGCTTCATCTCCTTCTACTTCTACTCCCTCCACTACACGTCGTCATTCTACTAGATCCAGATCATCTGTTAATATAGGTGATACGCCGAGAAAAGATATATCTCAAGATAAAGGCACAAGCTCGTCTAAGGGCAAGGGAAAAGCTGTATTAAAGCCTGCGCAAGAGGAGTCAAGAGGACCTCAAACCAGGAATGCTGCACGCAGAAGAGCAGCTCTTGATAAAGAAGCTCAAATGAAGCCTGTAAATGGTGACTCAACTTCTGAGGATGAGGATTTGGACATTTCTCCGGTGGAGATTGATGAGGCGTTGGTTATTGAAGATGATGATATCTCTGATGATGATGACGACGACCATGAAGATGTTTTGAGGGATGATTCTCTTCCTGTTTGCTTGCCAGACAAAGTGCATGATGTGAAATTGGGTGATTCAGCTGAGGAGAGTAGTGTGGCTCCTGCAACAGGTGATGGCCAGACTAATGCAGCCTCAGGTTCTAGCAGCAAAGTTGGTACTGTCAGGGGAGCAGACTCTGGTGATTTTAGGAGTACCTATTCTGGCTCAAGAGGTGCAATGTCATTTGCTGCTGCTGCCATGGCCGGACTTGGATCTGCTAATAGCAGAGGTATCAGGGGTGGCAGAGATCGGCAGGGGCGCCTATTGTTTGGTAGTTCTAATGATCCTCCTAAGTTAATCTTTACTGCTGGTGGGAAGCAGCTGAATAGGCATTTAACCATATATCAGGCAATTCAAAGACAGCTTGTGCTAGATGAAGATGATGATGAGAGGTTTGCTGGCAGTGACTATGTATCCAGTGATGGAAGCAGGCTGTGGGGTGATATTTACACTATAACTTACCAGAGGGCTGATAGCCAAACAGATAGGGCTTCCACTGGAGGTTCAAGCTCTAGTGCTTCAAAATCTGGCAAATCTGGTTCTGTTTCAAATTCCAGTTCTGAAGCCAAGTTGCATCAGACATCTGTTCTAGATAGTATCTTGCAGGGAGAATTGCCCTGTGAGCTGGAGAAATCTAATCCTACATACAATATATTGGCACTGTTGCGTGTGCTGGAGGGTTTGAACCAGCTTGCACCTCGTTTGAGGGCCCAGGTGATTACTGATAGCTTTGCTGAGGAAAAAATTTTGGATTTAGACGAGTTAGGTGTTACCACTGGGGCTAGGGTTCCTTCAGAAGAATTCATAAGCAGCAAGCTTACTCCAAAATTAGCTAGGCAAATACAAGATGCTCTTGCACTTTGCAGTGGGAGCCTTCCCTCATGGTGTTACCAGTTAACTAAAGCATGCCCATTTTTGTTTCCTTTTGAGACCCGGCGACAGTACTTTTATTCAACTGCCTTTGGGTTATCTCGTGCACTATATCGACTTCAGCAGCAGCAGGGGGCTGATGGTCATGGATCAACAAATGAAAGGGAGGTGAGGGTTGGGAGATTGCAGCGCCAAAAGGTTCGTGTGTCTCGGAACCGCATTTTGGATTCTGCTGCTAAAGTTATGGAGATGTATTCTAGCCAAAAGGCTGTACTTGAAGTTGAATATTTTGGTGAAGTTGGCACTGGCCTGGGTCCCACCCTTGAGTTTTATACACTTCTAAGTCATGACTTACAAAAAATTGGGCTACAAATGTGGAGATCAGATTCTTCGGAGAAATATCAAATGGAAATTGATGGGGGTGAAAAGAAAATGAAAAGCAGTGTTACTGGAGATGGTGAACTGGTTCAAGCTCCTCTTGGGTTGTTTCCACGGCCATGGCCTTCAAATGCTGATGCACCTGAGGGTAGCCAGTTTTTCAAAGTGATCGAGTATTTCCGGCTTTTGGGCCGTGTAGTGGCTAAAGCTCTTCAAGATGGACGCTTGTTGGATTTGCCTTTGTCAGTTGCATTTTATAAGCTCGTTCTTGGTCAAGAGCTTGATTTGCATGACATTCTATTCATTGATGCTGAGCTTGGAAAAACTTTGCAAGAGTTGAATGCACTTGTTTGTCGGAAATATTATATAGAATCTATTGGTGGTAGCTATACTGATAAAATTGCTAATCTACAATTTCGTGGGACGCGAATTGAAGATCTCTACTTTGATTTTACACTTCCTGGTTACCCAGAGTACATCTTGAAATCAGGAGATGAAATTGTTGACATCAATAATGTAGAGGAGTACATATCCTTGGTTGTTGATGCAACTGTCAAGACTGGAATCACACGTCAAATGGAATCATTTAGAGCAGGGTTCAACCAGGTTTTTGATATCTCATCTTTGCAAATATTTACTCCCCAAGAACTAGACTATTTGCTTTGTGGCCGTAGAGAGTTGTGGAAGGCTGAGACGTTAGCTGACCATATAAAATTTGACCATGGGTACACTGCTAAGAGCCCTGCAATAGTCCATTTACTTGAAATTATGGGAGAGTTTACACCAGAGCAGCAGCGTGCCTTCTGTCAATTTGTTACTGGTGCACCTAGGCTGCCACCTGGAGGACTGGCAGTCCTAAATCCAAAACTAACGATTGTGAGGAAGCTCTCATCAACTGCAGCTAATGCCTCAACTAATGGAAATGGGCCTTCAGAATCAGCTGATGATGACTTGCCAAGTGTGATGACATGTGCTAATTACCTAAAGCTTCCTCCCTATTCTACCAAGGAAATTATGTACAAGAAGCTACTCTATGCTATCAATGAAGGCCAGGGATCCTTTGATTTATCATGA 5724 0.4602 METRSRKRAEASSAAPSSSSSGPTTRSSNKRARLNNNNNTSSSSSSSATAVTASATATTITTRSRASRSANKDSLPPKNPPPLPPAPMDSTNESSGSRRNRGKNSDRENSDKGKEKEHDVRVRDRDSERGLALNMESGGGVGGDDDDNDSEGGVGILHQNLTSASSALQGLLRKLGAGLDDLLPSSAMGSSSASHQSGRLKKILFGLRADGEEGRQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSIFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADLVMEAVPLLTNLLQYHDSKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAASLISTSSSGGGQASLSTSTYTGLIRLLSTCASGSPLGAKTLLLLGISGILKDILSGSGVSSNASVSPALSRPPDQIFEIVNLANELLPPLPQGIISLPVSSNLFVKGPVIRKSPAGSSGKQEDTNGNVPEISAREKLLNDQPELLQQFAMDLLPVLVQIYGSSVNGPVRHKCLSVIGKLMYFSTAGMIQSLLTVTNISSFLAGVLAWKDPHVLVPALQIAEILMEKLPGTFSKMFIREGVVHAVDQLVFAGNSTSVPAQAASAEKDNDSVSGTSSRSRRYRRRSGNNNPDGNPLDDLKSPASVNVGSPPSSADIPTVNSSIRLSVCTAARAFKDKYFPSDPGAVEVGVTDDLLRLKNLCMKLNAGVDDQKSNGKGKSKTSGFVLEEISANKEEYLIGVISDMLKELGKGDGVSTFEFIGSGVVAALLNYFSCGYFSKDRTPETNLPKLRQQALTRFKLFIAVSLPTSTDDGAVAPMTVLVQKLQNALSSLERFPVVLSHSARSSSGSARLSSGLSALSQPFKLRLCRAQGEKSLRDYSSNVVLIDPLASLAAIEEFLWPRIQRSESGQKSTVPAGNSESGTTPAAAGASSPSTSTPSTTRRHSTRSRSSVNIGDTPRKDISQDKGTSSSKGKGKAVLKPAQEESRGPQTRNAARRRAALDKEAQMKPVNGDSTSEDEDLDISPVEIDEALVIEDDDISDDDDDDHEDVLRDDSLPVCLPDKVHDVKLGDSAEESSVAPATGDGQTNAASGSSSKVGTVRGADSGDFRSTYSGSRGAMSFAAAAMAGLGSANSRGIRGGRDRQGRLLFGSSNDPPKLIFTAGGKQLNRHLTIYQAIQRQLVLDEDDDERFAGSDYVSSDGSRLWGDIYTITYQRADSQTDRASTGGSSSSASKSGKSGSVSNSSSEAKLHQTSVLDSILQGELPCELEKSNPTYNILALLRVLEGLNQLAPRLRAQVITDSFAEEKILDLDELGVTTGARVPSEEFISSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSTNEREVRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKIGLQMWRSDSSEKYQMEIDGGEKKMKSSVTGDGELVQAPLGLFPRPWPSNADAPEGSQFFKVIEYFRLLGRVVAKALQDGRLLDLPLSVAFYKLVLGQELDLHDILFIDAELGKTLQELNALVCRKYYIESIGGSYTDKIANLQFRGTRIEDLYFDFTLPGYPEYILKSGDEIVDINNVEEYISLVVDATVKTGITRQMESFRAGFNQVFDISSLQIFTPQELDYLLCGRRELWKAETLADHIKFDHGYTAKSPAIVHLLEIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKLSSTAANASTNGNGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAINEGQGSFDLS* 1908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3246 1907 MobiDBLite consensus disorder prediction 10 74 - -
Dod03g3246 1907 Gene3D Hect, E3 ligase catalytic domains 1429 1669 - -
Dod03g3246 1907 MobiDBLite consensus disorder prediction 675 691 - -
Dod03g3246 1907 SMART hect_3 1500 1907 IPR000569 GO:0004842
Dod03g3246 1907 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 92 1907 - -
Dod03g3246 1907 MobiDBLite consensus disorder prediction 1 156 - -
Dod03g3246 1907 MobiDBLite consensus disorder prediction 1091 1125 - -
Dod03g3246 1907 SUPERFAMILY ARM repeat 200 666 IPR016024 -
Dod03g3246 1907 MobiDBLite consensus disorder prediction 1146 1183 - -
Dod03g3246 1907 MobiDBLite consensus disorder prediction 1065 1079 - -
Dod03g3246 1907 SMART arm_5 231 272 IPR000225 GO:0005515
Dod03g3246 1907 SMART arm_5 357 395 IPR000225 GO:0005515
Dod03g3246 1907 SMART arm_5 314 354 IPR000225 GO:0005515
Dod03g3246 1907 MobiDBLite consensus disorder prediction 99 131 - -
Dod03g3246 1907 Gene3D - 188 508 IPR011989 -
Dod03g3246 1907 ProSiteProfiles HECT domain profile. 1538 1907 IPR000569 GO:0004842
Dod03g3246 1907 MobiDBLite consensus disorder prediction 1154 1183 - -
Dod03g3246 1907 SUPERFAMILY Hect, E3 ligase catalytic domain 1481 1900 IPR035983 GO:0004842
Dod03g3246 1907 MobiDBLite consensus disorder prediction 981 1033 - -
Dod03g3246 1907 CDD HECTc 1489 1902 IPR000569 GO:0004842
Dod03g3246 1907 Gene3D Hect, E3 ligase catalytic domain 1778 1905 - -
Dod03g3246 1907 Pfam HECT-domain (ubiquitin-transferase) 1537 1907 IPR000569 GO:0004842
Dod03g3246 1907 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 92 1907 IPR045322 GO:0006511|GO:0061630
Dod03g3246 1907 MobiDBLite consensus disorder prediction 1292 1324 - -
Dod03g3246 1907 MobiDBLite consensus disorder prediction 675 731 - -
Dod03g3246 1907 MobiDBLite consensus disorder prediction 981 1128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3246 Dod-Chr3 65126010 65136349 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3246 K10590 - gmx:100783336 3029.2