Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3240 ATGGCGGAAGAAGAGTTCGAGGAGATCAATGTGGAGGAAGAGTTCTCGGTTTGGAAGAAGAACGCACCGTTGTTGTACGACCTCGTGGTTTCGCACCCTCTGCCATGGCCTTCTCTGACAGTTCACTGGCTCCCATCTTCTCCGCAACCCCACTCGCAGCATCCTTCCTTCAATCTCCACAAGATCCTCTACGCCACCCACACCTCCAACTCCGAACCCAACTTCCTCATCCTTGCCGATGTGGCCCTTCCCATCACAACTTCTCAGCCCATCATCAACTCCGATCCCGAAAACCCCGTTCTCCCCAAGGTGGAGGTTACGCAGAGGATACCGGTTGATGGGGAAGTGAATAGAGCAAGGAGTATGCCACAGAATCCTGGTGTTGTTGCGGCTAAGACGTGTGGTTCTGAGGTTTTTGTGTTTGATGTTGAGAAGCAGCGTGGGAAGCAACAAGGGGGTGGTTGTGATCCTGATTTGAGGTTGAGGGGTCATGACAAAGAAGGGTATGGTCTTTCTTGGAGCCCTTTTAAGAAGGGCCACCTTTTGAGTGGCTCGCATGACTGTAAGATTTGCCTGTGGGATGTGTTGGCTGCAGCAGGGCAAGGGAATGTGCTTGATGCGGTTCATGTTTATGATGAGGCACACGAGAGTGTGGTTGGAGATGTATGCTGGCATTCGAAGGACGAGAACTTATTTGGCTCAGTTGGAGATGACCGCAAATTGATAATTTGGGACTTGCGGACAAACAAGGCCCAGCAATCAGTCATAGCACACGAGAGCGAGGTGAACTTTCTTTCTTTCAATCCATTTAATGAATGGATTGTGGCTACGGCATCTTCAGACACCACCGTTGGTCTCTTTGATACACGGAAGCTGACAGAACCAGTGCATGTTTTAAGTAGCCACTCAGATGAGGTATTCCAGGTCGAATGGGATCCTAATCACGAGGCCGTGTTGGCATCTTCTGGTGCTGACAGAAGGCTCATGGTTTGGGACCTTAACAGGGTTGGGGATGAGCAGATAGAGGGAGATGGTGACGGGGGTCCTCCTGAGCTGCTCTTCTCTCATGGAGGTCATAAGGGGAAGATATCAGACTTCTCATGGAACAAAAATCAGCCATGGGTCATCTCAAGTGTAGCAGAGGACAATTCTTTCCATGTCTGGCAAATGGCGGAGAACATTTACAATGATGGTGATGACGATGACATCTGGACAGCTGATGATCAAAACTAA 1233 0.4988 MAEEEFEEINVEEEFSVWKKNAPLLYDLVVSHPLPWPSLTVHWLPSSPQPHSQHPSFNLHKILYATHTSNSEPNFLILADVALPITTSQPIINSDPENPVLPKVEVTQRIPVDGEVNRARSMPQNPGVVAAKTCGSEVFVFDVEKQRGKQQGGGCDPDLRLRGHDKEGYGLSWSPFKKGHLLSGSHDCKICLWDVLAAAGQGNVLDAVHVYDEAHESVVGDVCWHSKDENLFGSVGDDRKLIIWDLRTNKAQQSVIAHESEVNFLSFNPFNEWIVATASSDTTVGLFDTRKLTEPVHVLSSHSDEVFQVEWDPNHEAVLASSGADRRLMVWDLNRVGDEQIEGDGDGGPPELLFSHGGHKGKISDFSWNKNQPWVISSVAEDNSFHVWQMAENIYNDGDDDDIWTADDQN* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3240 410 Pfam WD domain, G-beta repeat 161 194 IPR001680 GO:0005515
Dod03g3240 410 Pfam WD domain, G-beta repeat 353 388 IPR001680 GO:0005515
Dod03g3240 410 Pfam WD domain, G-beta repeat 252 288 IPR001680 GO:0005515
Dod03g3240 410 Pfam WD domain, G-beta repeat 294 332 IPR001680 GO:0005515
Dod03g3240 410 Pfam WD domain, G-beta repeat 208 245 IPR001680 GO:0005515
Dod03g3240 410 SUPERFAMILY WD40 repeat-like 105 393 IPR036322 GO:0005515
Dod03g3240 410 ProSitePatterns Trp-Asp (WD) repeats signature. 319 333 IPR019775 -
Dod03g3240 410 SMART WD40_4 292 332 IPR001680 GO:0005515
Dod03g3240 410 SMART WD40_4 248 288 IPR001680 GO:0005515
Dod03g3240 410 SMART WD40_4 154 194 IPR001680 GO:0005515
Dod03g3240 410 SMART WD40_4 204 245 IPR001680 GO:0005515
Dod03g3240 410 SMART WD40_4 349 389 IPR001680 GO:0005515
Dod03g3240 410 Gene3D - 1 409 IPR015943 GO:0005515
Dod03g3240 410 PRINTS G protein beta WD-40 repeat signature 319 333 IPR020472 -
Dod03g3240 410 PRINTS G protein beta WD-40 repeat signature 181 195 IPR020472 -
Dod03g3240 410 PRINTS G protein beta WD-40 repeat signature 275 289 IPR020472 -
Dod03g3240 410 ProSiteProfiles Trp-Asp (WD) repeats profile. 161 195 IPR001680 GO:0005515
Dod03g3240 410 PANTHER WD40 REPEAT FAMILY 3 404 - -
Dod03g3240 410 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 13 84 IPR022052 -
Dod03g3240 410 ProSitePatterns Trp-Asp (WD) repeats signature. 181 195 IPR019775 -
Dod03g3240 410 ProSiteProfiles Trp-Asp (WD) repeats profile. 212 254 IPR001680 GO:0005515
Dod03g3240 410 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI2-RELATED 3 404 - -
Dod03g3240 410 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 299 334 - -
Dod03g3240 410 ProSiteProfiles Trp-Asp (WD) repeats profile. 299 334 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3240 Dod-Chr3 65085109 65089206 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3240 214 391 Miscellaneous Gene Families AT5G08390 23.034 3.21e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3240 K10752 - gmx:100791834 630.172