Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3212 ATGAACCTCTCCCCTTTGTACCATGTTGTCCTGTTCCTGGTGTTCCTCCTCTTCGCACTTCCGAATTCAGGAAGAAGCGCGCACGACTACCAAGACGCATTATCGAAGGCAATCCTGTTCTTCGAGGGGCAGCGGTCGGGGTTCCTGCCGCAGGACCAGAGGATGAGCTGGCGAGCCAACTCGGGCCTCAGTGACGGGTGGACATACAACACGGATCTCGCCGGCGGGTACTACGACGCCGGCGACAACATCAAGTTCGGTTTTCCGATGGCATTCACGACCACAATGCTGGCGTGGAGCGTGCTTGAATTCGGGGGCATGATGCCGCCCAATGAGTACAAGAATGCTTTGGTGGCAATTCGTTGGGCCACCGATTACTTGCTCAAGACTGTTTCCCAGCCCAACCGGATTTTTGTTCAGGTGGGTGATCCCAGCTCGGACCACGATTGCTGGGAGAGGCCAGAGGACATGGACACAGCAAGGACCGTGTACGCTATTGATGCACCAAATGCGGCATCCGATGTTGCCGGTGAAACAGCTGCCGCACTAGCAGCCTCGTCCTTGGCATTCTGGTCAAGTGACCCAGGCTATGCAGAGACATTGCTACGAAATGCTATTAGTGCCTTCCAATTTGCAGATAACTACAGGGGTGCTTACAGTGACAATGCTAATGTTAAGTATGGTGCCTGCCCATATTATTGTGATTTTGATGGCTTTCAGGACGAGTTGTTGTGGGGAGCCGCATGGCTAAGGAGGGCCACGAAGGACGATAATTTCCTCAACTACCTTCAAAGCAATGGCAAAACGCTTGGTGCTGACGACAACATCAATGAATTTGGTTGGGACAACAAGCACGCTGGCCTCAACGTTCTTGTCTCCAAGGAAGTCATAGAAGGAAGCATGTACTCTCTTGAATCCTTTAAGTCATCAGCTGATAGCTTCATGTGCACACTCATACCCGAATCACCAAGCTCACACATAGAGTACACACCTGGTGGACTAGTATACAGGCCCGGAGGGAGCAACTTGCAGCATGCAACTTCAATCTCTTTCCTTGAGTTGGTATATGCCAGTTACTTGGATCGCACGTCACAAAAACTCAATTGCGGGAACGTATATGTTAGTTCACAAACACTTCGCCAACATGCTAAGAGGCAAGTTGATTACATTTTGGGTGATAATCCAATGGGATTATCTTACATGGTTGGCTACAGCAACTATTATCCGCAGCGCATTCATCACCGTGGATCTTCTTTACCTTCCATGAAGGATCATCCTCAGTTTATTGCGTGCAAAGAAGGTTCAATATACTACAACTCAACGAATCCCAATCCCAATGTTCTTGTGGGAGCAATTGTTGGAGGACCTGGAGAAGATGATGTTTATGTGGATGATAGGGATGATTTTAGAAAGTCCGAGCCAACCACGTACATTAACGCACCATTTGTTGGGGTTCTTGCATATTTTGCTGCTAATCCCAACTTTAGTTAA 1491 0.4896 MNLSPLYHVVLFLVFLLFALPNSGRSAHDYQDALSKAILFFEGQRSGFLPQDQRMSWRANSGLSDGWTYNTDLAGGYYDAGDNIKFGFPMAFTTTMLAWSVLEFGGMMPPNEYKNALVAIRWATDYLLKTVSQPNRIFVQVGDPSSDHDCWERPEDMDTARTVYAIDAPNAASDVAGETAAALAASSLAFWSSDPGYAETLLRNAISAFQFADNYRGAYSDNANVKYGACPYYCDFDGFQDELLWGAAWLRRATKDDNFLNYLQSNGKTLGADDNINEFGWDNKHAGLNVLVSKEVIEGSMYSLESFKSSADSFMCTLIPESPSSHIEYTPGGLVYRPGGSNLQHATSISFLELVYASYLDRTSQKLNCGNVYVSSQTLRQHAKRQVDYILGDNPMGLSYMVGYSNYYPQRIHHRGSSLPSMKDHPQFIACKEGSIYYNSTNPNPNVLVGAIVGGPGEDDVYVDDRDDFRKSEPTTYINAPFVGVLAYFAANPNFS* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3212 496 PANTHER ENDO-1,4-BETA-GLUCANASE 9 495 - -
Dod03g3212 496 Pfam Glycosyl hydrolase family 9 30 486 IPR001701 GO:0004553|GO:0005975
Dod03g3212 496 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 389 415 IPR018221 -
Dod03g3212 496 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 462 480 IPR033126 -
Dod03g3212 496 Gene3D - 26 492 IPR012341 GO:0005975
Dod03g3212 496 SUPERFAMILY Six-hairpin glycosidases 27 492 IPR008928 GO:0005975
Dod03g3212 496 PANTHER ENDOGLUCANASE 24 9 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3212 Dod-Chr3 64731956 64736629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3212 1 492 Glycoside Hydrolase AT1G70710 58.333 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3212 K01179 - gmx:100101849 892.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g3212 03 64731956 64736629 Dod03g3212 03 64731956 64736629 ECH