Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3206 ATGGGGAGTTTGGGAGCGATTCTGAAACATCCAGATGACTTGTACCCGCTGCTGAAGCTGAAAATGGCGGTGAGGCAGGCCGAGAAGCAGATCCCTCCGGAGCCGCACTGGGGATTCTGTTACACAATGCTCCACAAGGTTTCTAGAAGCTTCGCCCTCGTCATTCAGCAGCTCGGCACCGAGCTTCGCAACGCCGTCTGCATATTTTATTTGGTTCTTCGAGCCTTGGATACCGTTGAGGATGATACCAGCATAGCTACAGATGTCAAGGTACCAATACTAATAGCTTTTCATCGCCACATATATGATCGCGATTGGCACTTTTCATGTGGCACAAAGGACTACAAAGTTCTAATGGACCAGTTTCACAATGTTTCAACTGCTTTTCTGGAACTTGGAAAGAACTATCAGGAGGCCATTGAGGATATTACCAAGAGGATGGGTGCTGGAATGGCCAAATTTATTTGCAAAGAGGTAGAAACTATTGATGACTATGATGAATATTGCCATTATGTGGCAGGACTTGTTGGGCTAGGCTTATCAAAGCTTTTCCATGCCTCTGGTTTAGAAGATCTGCCTTCAGATCACCTTTCCAATTCAATGGGCTTATTTCTGCAGAAAACAAACATCATTCGGGATTATCTAGAAGACATCAATGAGATCCCCAAGTCACGCATGTTCTGGCCTCGTGAGATCTGGAGTAAATATGTTAACAAACTTGAGGACCTGAAATATGAGGAGAATTCTACCAAGGCAGTGCAAAGCTTGAATGATATGGTCACTAATGCTCTGATGCATGCTGAAGATTGCTTAAAATACATGTCTGCTTTGCGAGACCTGGCTATATTTCGCTTTTGTGCTATTCCCCAGGTAATGGCAATTGGTACACTTGCAATGTGCTACAACAACATTCAAGTCTTCAGAGGTGTAGTCAAAATGAGGCGTGGTCTGACTGCCAAAGTGATCTACGGGACGAAGACAATGGCTGATGTCTATGGTGCTTTCTTTGATTTTGCATGTATGTTGCGGTCCAAGGTTGACAAAAATGATCCTAATGCTACAAAAACATTGAGCAGGCTGGAAGCTATACAGAAAACTTGCAGAGAATCTGGTCTGCTGAGCAAAAGGCATGCACATATCTTAGTAGCTTCCAAAGTATCTTTTTACCATTGA 1173 0.4382 MGSLGAILKHPDDLYPLLKLKMAVRQAEKQIPPEPHWGFCYTMLHKVSRSFALVIQQLGTELRNAVCIFYLVLRALDTVEDDTSIATDVKVPILIAFHRHIYDRDWHFSCGTKDYKVLMDQFHNVSTAFLELGKNYQEAIEDITKRMGAGMAKFICKEVETIDDYDEYCHYVAGLVGLGLSKLFHASGLEDLPSDHLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYVNKLEDLKYEENSTKAVQSLNDMVTNALMHAEDCLKYMSALRDLAIFRFCAIPQVMAIGTLAMCYNNIQVFRGVVKMRRGLTAKVIYGTKTMADVYGAFFDFACMLRSKVDKNDPNATKTLSRLEAIQKTCRESGLLSKRHAHILVASKVSFYH* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3206 390 SFLD Isoprenoid Synthase Type I 37 324 - -
Dod03g3206 390 TIGRFAM squal_synth: farnesyl-diphosphate farnesyltransferase 36 367 IPR006449 GO:0004310|GO:0008610
Dod03g3206 390 SUPERFAMILY Terpenoid synthases 37 367 IPR008949 -
Dod03g3206 390 CDD Trans_IPPS_HH 38 320 IPR033904 GO:0004311
Dod03g3206 390 Pfam Squalene/phytoene synthase 45 315 IPR002060 GO:0009058
Dod03g3206 390 ProSitePatterns Squalene and phytoene synthases signature 2. 201 229 IPR019845 GO:0016765
Dod03g3206 390 Gene3D Farnesyl Diphosphate Synthase 34 371 IPR008949 -
Dod03g3206 390 SFLD Squalene/Phytoene Synthase Like 37 324 IPR002060 GO:0009058
Dod03g3206 390 PANTHER FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE 1 381 IPR044844 GO:0004311
Dod03g3206 390 PANTHER SQUALENE SYNTHASE-LIKE ISOFORM X1 1 381 - -
Dod03g3206 390 ProSitePatterns Squalene and phytoene synthases signature 1. 168 183 IPR019845 GO:0016765
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3206 Dod-Chr3 64664031 64669510 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3206 K00801 - gmx:547940 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g3206 03 64664031 64669510 Dod03g3206 03 64664031 64669510 ECH