Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3190 ATGACGGGGAAGGAATTCAGGGAGAAGGCGTTGGGGCTGAGAGGAGTGAGGTTGCCTTCTGATGCGACCAAGGCTCCCATTCTGCCAACCGATAATCTTCCCTCCGATTTTGATTGGCGAGATCACGGAGCTGTTACCCCTGTCAAAAATCAGGGATCGTGTGGATCATGTTGGAGCTTCAGCACAACAGGGGCACTGGAAGGTGCTCACTTCCTCGCTACAGGGGAGCTTGTCAGTCTTAGTGAGCAGCAGCTTGTTGATTGTGATCACGAGTGTGACCCAGATGAACCAGGTTCATGTGATTCCGGGTGCAATGGCGGATTGATGAACAGTGCTTTTGAGTACATCCTTAAATCCGGTGGGGTCATGCGAGAGGAAGACTATCCTTATTCAGGTACTGATCGTGGGACCTGCAAATTTGACAAGACAAAGATAGCAGCATCTGTGGCAAACTTCAGTGTCGTCTCACTTGATGAGGACCAGATTGCTGCAAATCTTGTGAAAAATGGCCCTCTTGCAGTGGCTATCAATGCAGTATTTATGCAGACATATGTTGGTGGAGTATCATGCCCATACATATGTTCAAGGCGACTGGATCACGGGGTCTTACTGGTAGGATATGGTTCTGATGGCTATGCTCCCATTCGGATGAAGGAGAAGCCATATTGGATCATTAAAAATTCATGGGGAGAGAACTGGGGTGAAAATGGATACTACAAGATTTGCCGGGGACGAAATATCTGTGGGGTGGACTCCATGGTTTCCACTGTGGCTGCTGTTCACACTACTGCTCACTAG 798 0.4875 MTGKEFREKALGLRGVRLPSDATKAPILPTDNLPSDFDWRDHGAVTPVKNQGSCGSCWSFSTTGALEGAHFLATGELVSLSEQQLVDCDHECDPDEPGSCDSGCNGGLMNSAFEYILKSGGVMREEDYPYSGTDRGTCKFDKTKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVFMQTYVGGVSCPYICSRRLDHGVLLVGYGSDGYAPIRMKEKPYWIIKNSWGENWGENGYYKICRGRNICGVDSMVSTVAAVHTTAH* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3190 265 SUPERFAMILY Cysteine proteinases 1 258 IPR038765 -
Dod03g3190 265 PANTHER CYSTEINE PROTEASE RD19C-RELATED 1 259 - -
Dod03g3190 265 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 1 259 - -
Dod03g3190 265 Pfam Papain family cysteine protease 33 256 IPR000668 GO:0006508|GO:0008234
Dod03g3190 265 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 198 208 IPR025660 -
Dod03g3190 265 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 222 241 IPR025661 -
Dod03g3190 265 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 51 62 IPR000169 -
Dod03g3190 265 Gene3D Cysteine proteinases 1 258 - -
Dod03g3190 265 PRINTS Papain cysteine protease (C1) family signature 51 66 IPR000668 GO:0006508|GO:0008234
Dod03g3190 265 PRINTS Papain cysteine protease (C1) family signature 222 228 IPR000668 GO:0006508|GO:0008234
Dod03g3190 265 PRINTS Papain cysteine protease (C1) family signature 200 210 IPR000668 GO:0006508|GO:0008234
Dod03g3190 265 SMART pept_c1 33 258 IPR000668 GO:0006508|GO:0008234
Dod03g3190 265 CDD Peptidase_C1A 34 257 IPR039417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3190 Dod-Chr3 64502701 64505694 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3190 K01373 - gmx:100791283 521.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g3190 03 64502701 64505694 Dod03g3190 03 64502701 64505694 ECH