Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3180 ATGTCAGGTCCACTCGATCGTTTAGCGAGACCATGCTTTGAGGGGTTCTCCGGTAGTGATGAGAAGAAGGAAAGGAGATCTGATTTCGAGAACTCTGAGGATGAAAGGAGGACAAGGATTGGGTCTCTAAAAAAGAAGGCGCTCAATGCATCTTCGAAATTCAAGCATTCTTTGAAGAAGAAGAGCAGCAGGAGGAAAAGCGACGGCCGTGTTAGCTCAGTTTCCATTGAGGATGTGAGGGATTATGAGGAGCTGCAGGCCGTCGATGCATTTCGCCAGTCGTTGATTATGGACGAATTGCTTCCCGAAAAACATGATGATTACCATATGATGTTAAGGTTTCTGAAAGCAAGGAAGTTTGATGTTGAAAAAGCAAAGCATATGTGGGCTGATATGCTGCAATGGAGGAAGGAGTTTGGCACTGACACTATTATGGAGGATTTTGAGTTCAAAGAGGTAAACGAAGTTGTAAAGTATTATCCACATGGCTATCATGGTGTCGATAAGGACGGAAGACCTGTTTACATTGAAAGGCTTGGAAAAGTGGATCCAAACAAAATCATGCAAACTACAACTATGGAGAGATATGTAATGTACCATGTACAGGAGTTTGAGAAAGCTTTTGCGATAAAGTTTCCTGCTTGCACTATTGCTGCCAAAAGGCACATAGATTCAAGCACCACAATCTTAGATGTTCAAGGCGTGGGCCTTAAAAACTTCACAAAGTCTGCCCGGGAACTGATTATGCGATTACAGAAGATTGATAGTGACAATTATCCTGAAACTCTCTTCCAAATGTTTATCATAAATGCTGGCCCTGGATTTAGGTTGCTGTGGAACACTATCAAGTCTTTTCTTGATCCCAAAACAACTTCAAAGATTCATGTTCTTGGAAACAAGTACCAAAGCAAATTGCTTGAAATAATTGATGCCAGTGAATTGCCAGATTTTCTGGGAGGTACCTGCACTTGTGCAGATCAGGGAGGTTGCCTCAGATCTGATAAAGGGCCCTGGAAAAACCCTGAAATATTGAAGATGATTCTCAGTGGCGAAACACGGGGGGCAAGGCAGATAGTAAAAGTTCTAAACAGTGAAGGGAAGGTTATTGCATATGCCAAACCACGATACCCAATGGTTAAAAGCAGTGATACATCCACAGCTGAATCAGGGTCTGAAGCTGAAGATATGGCTTCTCCAAAAGCTGTGAAAAGTTATTCACACCTTAGGTTGACCCCTGTTCGCGAGGAAGCCAAGGTTGTCGGAAAGACAAGCTATGCGGGTAATGGCAACTTATCTGGGTATGACGAATATGTTCCGATGGTGGACAAAGCTGTTGATGCTGGCTGGAAGAAGCAACCTTCACTCCAGATGACTAAAACCTCAGAAGGCACATCATCCCTTTCTAACTCTCCTAAAACACGAGAAGGAATCCGAGCTCGGATTTGGGTAGCCCTTACTGTATTCTTTTTGAGCCTATTCACTCTCTTCCGTTCTGTCGCATGCCAAGTGACCAAGAAAATTCCCGCAGTATCATCAAATGATTATCAGAACACTTCAGAGCCAACGCTTGATACTGTAAAGATGGGAGATTGTCGTTCTTCTTCACCCACTCCAGCACATTCAGAGAAAAATCTCCTTTCCTCCTTGATGAAAAGGTTAGGTGAGCTTGAAGAGAAGGTTGAAACACTCCAATCGAAGCCATCTGAGATGCCTTATGAGAAGGAGGAATTGCTAAATGCTGCTGTCTGCCGGGTAGATGCTTTGGAAGCAGAGTTAATTGCAACAAAAAAGGCTCTCTATGAAGCGCTAATGAGGCAGGAAGAACTGCTTGCTTACATTGATAGTCAGGAAGAAGCTAAGCTAAGGAAGAAGAAATTTTGCTGGTGA 1887 0.433 MSGPLDRLARPCFEGFSGSDEKKERRSDFENSEDERRTRIGSLKKKALNASSKFKHSLKKKSSRRKSDGRVSSVSIEDVRDYEELQAVDAFRQSLIMDELLPEKHDDYHMMLRFLKARKFDVEKAKHMWADMLQWRKEFGTDTIMEDFEFKEVNEVVKYYPHGYHGVDKDGRPVYIERLGKVDPNKIMQTTTMERYVMYHVQEFEKAFAIKFPACTIAAKRHIDSSTTILDVQGVGLKNFTKSARELIMRLQKIDSDNYPETLFQMFIINAGPGFRLLWNTIKSFLDPKTTSKIHVLGNKYQSKLLEIIDASELPDFLGGTCTCADQGGCLRSDKGPWKNPEILKMILSGETRGARQIVKVLNSEGKVIAYAKPRYPMVKSSDTSTAESGSEAEDMASPKAVKSYSHLRLTPVREEAKVVGKTSYAGNGNLSGYDEYVPMVDKAVDAGWKKQPSLQMTKTSEGTSSLSNSPKTREGIRARIWVALTVFFLSLFTLFRSVACQVTKKIPAVSSNDYQNTSEPTLDTVKMGDCRSSSPTPAHSEKNLLSSLMKRLGELEEKVETLQSKPSEMPYEKEELLNAAVCRVDALEAELIATKKALYEALMRQEELLAYIDSQEEAKLRKKKFCW* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3180 628 Coils Coil 539 566 - -
Dod03g3180 628 MobiDBLite consensus disorder prediction 16 42 - -
Dod03g3180 628 Pfam CRAL/TRIO domain 159 320 IPR001251 -
Dod03g3180 628 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 152 326 IPR001251 -
Dod03g3180 628 Gene3D - 140 350 IPR036865 -
Dod03g3180 628 MobiDBLite consensus disorder prediction 1 70 - -
Dod03g3180 628 MobiDBLite consensus disorder prediction 49 66 - -
Dod03g3180 628 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH8 3 625 - -
Dod03g3180 628 SMART sec14_4 152 323 IPR001251 -
Dod03g3180 628 MobiDBLite consensus disorder prediction 380 400 - -
Dod03g3180 628 SUPERFAMILY CRAL/TRIO domain 152 345 IPR036865 -
Dod03g3180 628 SMART CRAL_TRIO_N_2 107 132 IPR011074 -
Dod03g3180 628 SUPERFAMILY CRAL/TRIO N-terminal domain 81 148 IPR036273 -
Dod03g3180 628 MobiDBLite consensus disorder prediction 453 472 - -
Dod03g3180 628 Gene3D - 53 139 - -
Dod03g3180 628 Pfam CRAL/TRIO, N-terminal domain 103 131 IPR011074 -
Dod03g3180 628 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 3 625 - -
Dod03g3180 628 CDD SEC14 154 321 IPR001251 -
Dod03g3180 628 PRINTS Cellular retinaldehyde-binding protein signature 312 321 - -
Dod03g3180 628 PRINTS Cellular retinaldehyde-binding protein signature 110 132 - -
Dod03g3180 628 PRINTS Cellular retinaldehyde-binding protein signature 279 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3180 Dod-Chr3 64385309 64390678 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3180 86 317 Acyl Lipid Metabolism Gene Families AT5G47730 28.395 1.04e-19 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3180 - - gmx:100785793 1060.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g3180 03 64385309 64390678 Dod03g3180 03 64385309 64390678 ECH