LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod03g3159	ATGGCCTCTGCATGTGTGACCATGAAAGCCAATTCCCACTTTGCAAACTCAATAAAAGACAATACTTTCATTCAAGATAATGGTTTCTTAGGTGAAAGGGTCAAGGGGGGACTGAATTACAGTCCTTGGATTGTTAACCAGTTGGCAAAAAGATTGAGAACCAAGGAGAGGGTCAGGAAGGCCAAACCTGCTGTGGTATCTGCTGTTCTTACATCAAACGATACCAAAGAGGCAGTGACCATTCAAATGCCATCTTTTCTCAGAAGAAAGGCTGACCCAAAAAATGTTGTTTCCATCGTATTGGGAGGTGGTCCTGGGACTCAACTACTTCCTCTTACCAAACGAGCCGCCACACCTGCTGTCCCGGTTGGCGGATGCTACAGGCTTATAGACATCCCAATGAGCAACTGCATCAACAGTGGCATCAACAAAATATTTGTACTGACACAGTTCAACTCTGCATCCCTCAACCGTCACATAGCCCGCACCTACTTTGGAAATGGCATCAACTTTGGGGATGGATATGTGGAGGTTCTGGCGGCTACTCAAACACCAGGTGAAGCTGGAAAGAGGTGGTTCCAAGGAACTGCAGATGCAGTGAGGCAATTTACATGGGTATTTGAGGATGCCAAGCACACAAATGTTGAGAATGTTTTGATCTTGGCTGGAGATCATTTATACCGAATGGATTACATGGACCTTGTGCAGAGTCATGTAGACAGAAATGCAGATATTACAGTATCATGTGCTGCTGTTGGTGACAGCCGTGCATCGGATTATGGATTGGTCAAGGTAGATGGCAGAGGCCGGATCATCCATTTTTCAGAAAAACCAAAGGGCACTGATCTCAAAGCAATGCAAGTAGATACTTCTATTCTGGGATTGTCACCCCATGATGCAGTGAAGTCACCATATATTGCATCCATGGGAGTTTATGTATTCAAGACAGATGTTTTACTCAAGCTTCTGAAATGGAGATATCCCACATCCAATGACTTCGGATCTGAAATCATTCCTGCATCTGTGGGGGAACAGAATGTTCAAGCATATTTTTTCGGAGACTATTGGGAAGACATTGGAACAATAAAATCCTTTTATGATGCTAACATGGCACTTACTGAAGAGAATCCAATGTTCAAATTTTATGATCCCAAGACACCCATTTACACATCTCCAAGATTCCTGCCACCAACAAAGATTGATAAGTGCCGAATTGTGGATGCAATTATCTCCCATGGATGTTTCCTGCGCGAATGCACCATCCAACATTCCATTGTGGGAGAGCGTTCGCGGTTGGATTATGGCGTTGAGCTCCAGGACACTGTAATGATGGGAGCAGACTGTTACCAAACTGAATCCGAGATTGCTTCCCTATTGGCAGAGGGGAAGGTTCCCATTGGGATTGGAAGGAACACCAAGATCAGGAACTGCATAATTGACAAAAATGCAAAGATCGGGAAAGATGTCATCATCATGAACAAAGATGGAGTTCAAGAAGCAGACAGACCACAAGATGGATTCTACATTCGGTCAGGAATCACCATCATTATGGAGAAGGCAACAATAGAGGATGGCACTGTCATATGA	1587	0.4417	MASACVTMKANSHFANSIKDNTFIQDNGFLGERVKGGLNYSPWIVNQLAKRLRTKERVRKAKPAVVSAVLTSNDTKEAVTIQMPSFLRRKADPKNVVSIVLGGGPGTQLLPLTKRAATPAVPVGGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGINFGDGYVEVLAATQTPGEAGKRWFQGTADAVRQFTWVFEDAKHTNVENVLILAGDHLYRMDYMDLVQSHVDRNADITVSCAAVGDSRASDYGLVKVDGRGRIIHFSEKPKGTDLKAMQVDTSILGLSPHDAVKSPYIASMGVYVFKTDVLLKLLKWRYPTSNDFGSEIIPASVGEQNVQAYFFGDYWEDIGTIKSFYDANMALTEENPMFKFYDPKTPIYTSPRFLPPTKIDKCRIVDAIISHGCFLRECTIQHSIVGERSRLDYGVELQDTVMMGADCYQTESEIASLLAEGKVPIGIGRNTKIRNCIIDKNAKIGKDVIIMNKDGVQEADRPQDGFYIRSGITIIMEKATIEDGTVI*	529

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod03g3159	528	ProSitePatterns	ADP-glucose pyrophosphorylase signature 3.	307	317	IPR005836	GO:0005978\|GO:0008878
	Dod03g3159	528	ProSitePatterns	ADP-glucose pyrophosphorylase signature 2.	192	200	IPR005836	GO:0005978\|GO:0008878
	Dod03g3159	528	CDD	ADP_Glucose_PP	99	359	-	-
	Dod03g3159	528	ProSitePatterns	ADP-glucose pyrophosphorylase signature 1.	102	121	IPR005836	GO:0005978\|GO:0008878
	Dod03g3159	528	PANTHER	GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED	1	528	IPR011831	GO:0005978\|GO:0008878
	Dod03g3159	528	CDD	LbH_G1P_AT_C	396	522	-	-
	Dod03g3159	528	Gene3D	Hexapeptide repeat proteins	394	528	-	-
	Dod03g3159	528	SUPERFAMILY	Trimeric LpxA-like enzymes	390	528	IPR011004	-
	Dod03g3159	528	TIGRFAM	glgC: glucose-1-phosphate adenylyltransferase	96	492	IPR011831	GO:0005978\|GO:0008878
	Dod03g3159	528	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	94	489	IPR029044	-
	Dod03g3159	528	Pfam	Nucleotidyl transferase	98	374	IPR005835	GO:0009058\|GO:0016779
	Dod03g3159	528	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	81	393	IPR029044	-
	Dod03g3159	528	PANTHER	GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE	1	528	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod03g3159	Dod-Chr3	64236181	64241196	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod03g3159	K00975		-	gmx:100808791	974.926

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod03g3159	03	64236181	64241196	Dod03g3159	03	64236181	64241196	ECH