Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3131 ATGGTAGCTCCTCCAGCCATGTCAGTTCCTGCGAGTCCCAGCTTCGCTATCGCTTCTCGCACCAGAAATTCGCCCCACCTCCTTTTTCCTCACAGAAACCCATGCTCGATAACTTCTTCATTGCCAAGCCCCTATGGCCACCCATCTAAAGTTGGTTTGTCAAGTACAAGCCGTGGCTTTCCTTTCAAAGTCGATGAGAAAAATGTTTATGATGCTAGTACAAGTTATGGTGCAATTGAAGCCAAGAAAGGGAATCCACCAATAACGCCAGCAGTGATGACTCCTGGAGGACCTCTTGATCTGTCATCTGTGTTGTTCAGGAATCGTATAATATTCATTGGACAGCCAGTAAACTCGCAAGTGTCTCAGAGAGTTATTTCTCAGCTTGTGACTCTGGCTACTATTGATGAAGATACAGATATACTGGTGTATATAAACTGCCCTGGTGGAAGCACATACTCAGTGTTGGCAATTTATGATTGCATGTCTTGGATAAAGCCCAAAGTTGGTACAGTATGTTTTGGAGTAGCTGCAAGCCAAGGAGCACTTCTTCTTGCAGGTGGGGAGAAGGGAATGCGCTATGCAATGCCAAATGCAAGAATAATGATACATCAACCACAGAGTGGATGTGGGGGCCATGTTGAGGATGTGAGGCGCCAAGTGAATGAAGCTGTTCAATCTCGCCATAAAATTGACAAGATGTATAGTGCGTTCACCGGGCAGCCATTAGAGAAGGTGCAACAGTACACAGAAAGGGACCGTTTTCTGTCCGTTTCTGAGGCTTTGGAGTTTGGTCTTATTGATGGCGTCCTAGAAACAGAATATTGA 828 0.4553 MVAPPAMSVPASPSFAIASRTRNSPHLLFPHRNPCSITSSLPSPYGHPSKVGLSSTSRGFPFKVDEKNVYDASTSYGAIEAKKGNPPITPAVMTPGGPLDLSSVLFRNRIIFIGQPVNSQVSQRVISQLVTLATIDEDTDILVYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNARIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKIDKMYSAFTGQPLEKVQQYTERDRFLSVSEALEFGLIDGVLETEY* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3131 275 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 6, CHLOROPLASTIC 17 275 - -
Dod03g3131 275 PRINTS Clp protease catalytic subunit P signature 100 115 IPR001907 GO:0004176|GO:0004252|GO:0006508
Dod03g3131 275 PRINTS Clp protease catalytic subunit P signature 171 188 IPR001907 GO:0004176|GO:0004252|GO:0006508
Dod03g3131 275 PRINTS Clp protease catalytic subunit P signature 140 160 IPR001907 GO:0004176|GO:0004252|GO:0006508
Dod03g3131 275 PRINTS Clp protease catalytic subunit P signature 192 211 IPR001907 GO:0004176|GO:0004252|GO:0006508
Dod03g3131 275 PRINTS Clp protease catalytic subunit P signature 249 268 IPR001907 GO:0004176|GO:0004252|GO:0006508
Dod03g3131 275 Pfam Clp protease 100 273 IPR023562 -
Dod03g3131 275 CDD S14_ClpP_2 100 270 IPR001907 GO:0004176|GO:0004252|GO:0006508
Dod03g3131 275 ProSitePatterns Endopeptidase Clp histidine active site. 193 206 IPR033135 -
Dod03g3131 275 Gene3D - 78 275 - -
Dod03g3131 275 SUPERFAMILY ClpP/crotonase 99 273 IPR029045 -
Dod03g3131 275 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 88 274 IPR001907 GO:0004176|GO:0004252|GO:0006508
Dod03g3131 275 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 17 275 IPR023562 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3131 K01358 - gmx:100799710 491.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g3131 03 63883520 63887309 Dod03g3131 03 63883520 63887309 ECH