Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3117 ATGGAGATCGATTTCAAAGAGTATCAGTTACGCTGTGAACTCCACGGCCACGAAGACGACGTTCGCGGAATATGCGTATGCGGCAACGAGGCCATAGCGACGTCGTCAAGGGACAGGACCATTAGGTTTTGGTCTCAGGACCCTTCCGAGACGCGCAAGTTCGTGTCCTCCAAGATTCTCCTGGGACACACAAGTTTCGTTGGGCCATTGGCATGGATTTCTCCGAACGAGGAGTTCCCAGAAGGTGGGATCGTGTCTGGTGGGATGGACACTCTGGTTTTGGTTTGGGACTTGAAGAGTGGGGAGAAAGTGCAAACCCTCAGGGGCCATCAGTTGCAGGTCACTGGCATTGCATTGGATGGTGCTGATATTGTTTCCTCCTCTGTTGATTGTACATTGAGACGGTGGAGGACTGGGCAATCTATAGAGATGTGGGAGGCTCATAAAGCACCTGTCCAAGCTGTTGTTAAGCTGCCCTCAGGCGAGCTTGTTACAGGTTCAAGTGACACAACTTTAAAGCTTTGGAGAGGAAAAACTTGCTTACATACTTTTGATGGACATGCAGATACAGTTCGAGGCTTGGCTGTGATGTCTGGTCTTGGAATCCTATCTGCATCACATGATGGTTCTCTCAGATTATGGGCAGTAAGTGGTCAAGTGTTGATGGAGATGGTTGGGCATACTGCAATTGTTTATTCAGTTGATTCACATGCATCAGGACTTATTGTCAGTGGTAGTGAAGACCGTTTTGCAAAAATATGGAAAGATGGAGCTTGTGTTCAAAGCATAGAGCATCCTGGTTGTGTTTGGGATGCAAAATTTCTGGAAAATGGGGATATTGTGACGGCATGTTCGGATGGAGTTGTACGCATCTGGACTTTTCATCAAGATAATGTTGCTGACCAGCTAGAGCGTGATTTATACACTTCACAACTTTCTCAATATAAGTCTAGTAGAAAGAGAGTTGGAGGATTGAAATTGGAAGAGTTACCGGGCTTGGAGGCATTAAAGATCCCAGGTACTAGCAATGGCCAGACAAAAGTGGTCAGAGAGGGGGATAATGGGGTGGCATATGCATGGAACGTGGCAGAACAGAAGTGGGATAAAATTGGTGAAGTTGTTGATGGACCAGAGGAATCAAGTCGCCCTTCCCTCGATGGTGTTCAGTATGACTATGTGTTTGATGTTGATATTGGAGATGGTATGCCTATCCGTAAGTTGCCATACAACCGATTAGATAATCCATATGACGTTGCTGACAAATGGCTGCTCAAGGAAAACCTTCCTCTTTCCTTTCGTGAGCAAATTGTGCAGTTCATACTTCAAAATACTGGACAAAAGGATATTACTTTTGATGCTTCATTTCGTGATCCCTTTACTGGCGCCAATGCTTATGTACCAGGGCAACCTTCACGTGGTCCTGATATTTCTGTGAAACCTACTTTCAAGCATATTCCTAAGAAAGGGATGCTTGTTTTTGATACAGCTCAGTTTGATGGGATCCTTAAAAAGATCACCGAGTTCAGCAATGCTTTACTATCTGACCAGGAAAAGCAGAACTTGTCTTTGACTGAACATGATGTTTCTCAACTGGGTGCCGTTGTGAAAACTCTGAAAGATACTTCACATTATCATTCTAGTAAATTTTCAGACTCTGATATAGCTTTGTTGCTGAAGTTGCTTCGGTCATGGCCAATTGCAATGATATTTCCTGTCATTGATATTATAAGGATGATAGTTCTTCATCCAGATGGGGCTACTGTACTTCACAAGCATTTTCAAACCGAAGATGATATACTAATGGAAGTGATTAAGAAAGTCACTTTAAATCCAACAATTCCTGCAAATCTTTTGACCAGCGTTCGTACTATTACTAATCTCTTTAAGAATTCATGCTTCTACAACTGGTTGCAGAAACATCGAAGTGAGATTCTTGATGCCTTCTCAAGTTGTAGTTCATCTCCAAACAAAAATTTGCAGTTGTCCTACTCTACCTTGATACTCAATTATGCCGTGCTATTAATTGAATCAAAGGATCAAGAAGGTCAATCTCAAGTTTTGTCAGCAGCACTTGAGATTGCTGAGGATCAAAATGTGGACATTGATTCCAAATTCCGTGCTTTAGTTGCTGTTGGATCATTGATGCTTGAAGGTCTTGTCAAGCAAGTCGCTCTGGACTTCGATGTATTAAACATTGCAAAAGCAGCTAAGGGTTCTAAGGAAGCCAAGATTGCAGAAGTTGGATCTGACATCGAGCTATTAGCAAAGCAGAGCTGA 2277 0.4313 MEIDFKEYQLRCELHGHEDDVRGICVCGNEAIATSSRDRTIRFWSQDPSETRKFVSSKILLGHTSFVGPLAWISPNEEFPEGGIVSGGMDTLVLVWDLKSGEKVQTLRGHQLQVTGIALDGADIVSSSVDCTLRRWRTGQSIEMWEAHKAPVQAVVKLPSGELVTGSSDTTLKLWRGKTCLHTFDGHADTVRGLAVMSGLGILSASHDGSLRLWAVSGQVLMEMVGHTAIVYSVDSHASGLIVSGSEDRFAKIWKDGACVQSIEHPGCVWDAKFLENGDIVTACSDGVVRIWTFHQDNVADQLERDLYTSQLSQYKSSRKRVGGLKLEELPGLEALKIPGTSNGQTKVVREGDNGVAYAWNVAEQKWDKIGEVVDGPEESSRPSLDGVQYDYVFDVDIGDGMPIRKLPYNRLDNPYDVADKWLLKENLPLSFREQIVQFILQNTGQKDITFDASFRDPFTGANAYVPGQPSRGPDISVKPTFKHIPKKGMLVFDTAQFDGILKKITEFSNALLSDQEKQNLSLTEHDVSQLGAVVKTLKDTSHYHSSKFSDSDIALLLKLLRSWPIAMIFPVIDIIRMIVLHPDGATVLHKHFQTEDDILMEVIKKVTLNPTIPANLLTSVRTITNLFKNSCFYNWLQKHRSEILDAFSSCSSSPNKNLQLSYSTLILNYAVLLIESKDQEGQSQVLSAALEIAEDQNVDIDSKFRALVAVGSLMLEGLVKQVALDFDVLNIAKAAKGSKEAKIAEVGSDIELLAKQS* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3117 758 Gene3D - 377 452 IPR038122 -
Dod03g3117 758 ProSiteProfiles PFU domain profile. 359 454 IPR015155 -
Dod03g3117 758 Pfam WD domain, G-beta repeat 179 214 IPR001680 GO:0005515
Dod03g3117 758 Pfam WD domain, G-beta repeat 101 136 IPR001680 GO:0005515
Dod03g3117 758 Pfam WD domain, G-beta repeat 219 255 IPR001680 GO:0005515
Dod03g3117 758 Pfam WD domain, G-beta repeat 12 45 IPR001680 GO:0005515
Dod03g3117 758 Pfam WD domain, G-beta repeat 258 292 IPR001680 GO:0005515
Dod03g3117 758 Pfam WD domain, G-beta repeat 144 175 IPR001680 GO:0005515
Dod03g3117 758 Gene3D - 483 754 IPR011989 -
Dod03g3117 758 ProSiteProfiles PUL domain profile. 483 754 IPR013535 -
Dod03g3117 758 ProSitePatterns Trp-Asp (WD) repeats signature. 84 98 IPR019775 -
Dod03g3117 758 ProSiteProfiles Trp-Asp (WD) repeats profile. 14 45 IPR001680 GO:0005515
Dod03g3117 758 PANTHER PHOSPHOLIPASE A-2-ACTIVATING PROTEIN 4 754 - -
Dod03g3117 758 PRINTS G protein beta WD-40 repeat signature 84 98 IPR020472 -
Dod03g3117 758 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Dod03g3117 758 PRINTS G protein beta WD-40 repeat signature 163 177 IPR020472 -
Dod03g3117 758 PANTHER PHOSPHOLIPASE A2-ACTIVATING PROTEIN 4 754 - -
Dod03g3117 758 ProSiteProfiles Trp-Asp (WD) repeats profile. 84 106 IPR001680 GO:0005515
Dod03g3117 758 Gene3D - 4 309 IPR015943 GO:0005515
Dod03g3117 758 ProSiteProfiles Trp-Asp (WD) repeats profile. 145 175 IPR001680 GO:0005515
Dod03g3117 758 ProSiteProfiles Trp-Asp (WD) repeats profile. 224 255 IPR001680 GO:0005515
Dod03g3117 758 Pfam PFU (PLAA family ubiquitin binding) 339 447 IPR015155 -
Dod03g3117 758 SMART WD40_4 7 45 IPR001680 GO:0005515
Dod03g3117 758 SMART WD40_4 100 137 IPR001680 GO:0005515
Dod03g3117 758 SMART WD40_4 138 176 IPR001680 GO:0005515
Dod03g3117 758 SMART WD40_4 217 255 IPR001680 GO:0005515
Dod03g3117 758 SMART WD40_4 53 97 IPR001680 GO:0005515
Dod03g3117 758 SMART WD40_4 256 293 IPR001680 GO:0005515
Dod03g3117 758 SMART WD40_4 177 215 IPR001680 GO:0005515
Dod03g3117 758 CDD WD40 10 292 - -
Dod03g3117 758 Pfam PUL domain 485 750 IPR013535 -
Dod03g3117 758 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 214 IPR001680 GO:0005515
Dod03g3117 758 SUPERFAMILY WD40 repeat-like 5 304 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3117 Dod-Chr3 63732124 63742610 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3117 1 757 Acyl Lipid Metabolism Gene Families AT3G18860 71.372 0.0 1168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3117 K14018 - gmx:100816481 1344.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g3117 03 63732124 63742610 Dod03g3117 03 63732124 63742610 ECH