Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3108 ATGTCAGAAGCCCAAAGGCTTTTTGATACATTAACAGAAAGAAATTCTGTTGTCTGGACAGCTCTATGTTCTGGTTATGTCAAATCACAACAATGCGAGGAAGTCTTCAAACTTTTCAGAGAGTATCAAACTACAGAGGCATCAGTTCCTGATGCCATGGTCATCATCAGTGTGCTCAGTGCCTGCACGATACAAGCAGCCCTTAGTTTAGGGAAGCAGATTCACGCTTATGTCTTGAGAATGAAACTCCATATGGATGAGAAATTGCTGAGTGCTTTGGTTGATATGTACTCAAAATGTGGGAATATCACATATGCTGAGAAAGTCTTCCAACTAGTTACTGATAGTAATAGAGATGCAGTCTTATATAATGTTATGATAGCTGGTTATGCTCACCACGGATTTGAAAATGAATCTATTCAGCTTTTTCAGGAAATGTTGAAGAAACGTGTCAAGCCAGATGCAGTTACTTTTGTTGCACTTCTATCTTCTTGCCGGCACCGTGGATTAGTAGAACTAGGAGAGAAGTTTTTTATTTCCATGGAAGAAGATTACAATATAGTGCCCGAGGATAACCACTATGCATGTATGGTTGATATGTATGGAAGGGCTAATCAACTAGAAAAAGCTTTAGAATTTATGAGGAAGATTCCCATACAGATAGATGCTACAATCTGGGGTGCATTTCTTAATGCTTGTCAGATGAGCAGCAATACAGCACTTGCCAAACGGGCAGAAGAGGAACTATTGAAAATGGAGGCAGATAATGGGTCTAGGTATGTGCAATTGGCTAATCTCTACGCTGCCAAGGGGAAATGGGATGACATGGGAAGAGTAAGAAAGAAAATGAGAGGGAAGGAGGCTAAGAAGCTTGCTGGTTGCAGTTGGATATATGTGGAAAATGGGATTAATGTATTTACTTCTGGTGATACATCTCATTCAAAAGCAGATGCAATATATTCAACTTTATTATGCTTGAATGGGAAATTGTATTTACCATTCACAGAACTGCAGCTAGCTTTATCAAATACAGGGTGA 1038 0.394 MSEAQRLFDTLTERNSVVWTALCSGYVKSQQCEEVFKLFREYQTTEASVPDAMVIISVLSACTIQAALSLGKQIHAYVLRMKLHMDEKLLSALVDMYSKCGNITYAEKVFQLVTDSNRDAVLYNVMIAGYAHHGFENESIQLFQEMLKKRVKPDAVTFVALLSSCRHRGLVELGEKFFISMEEDYNIVPEDNHYACMVDMYGRANQLEKALEFMRKIPIQIDATIWGAFLNACQMSSNTALAKRAEEELLKMEADNGSRYVQLANLYAAKGKWDDMGRVRKKMRGKEAKKLAGCSWIYVENGINVFTSGDTSHSKADAIYSTLLCLNGKLYLPFTELQLALSNTG* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3108 345 PANTHER - 2 114 - -
Dod03g3108 345 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 119 153 IPR002885 -
Dod03g3108 345 PANTHER - 34 326 - -
Dod03g3108 345 Pfam E motif 237 297 IPR046848 -
Dod03g3108 345 TIGRFAM PPR: pentatricopeptide repeat domain 121 155 IPR002885 -
Dod03g3108 345 Gene3D Tetratricopeptide repeat domain 118 323 IPR011990 GO:0005515
Dod03g3108 345 Pfam PPR repeat family 119 165 IPR002885 -
Dod03g3108 345 Gene3D Tetratricopeptide repeat domain 1 117 IPR011990 GO:0005515
Dod03g3108 345 Pfam PPR repeat 194 216 IPR002885 -
Dod03g3108 345 Pfam PPR repeat 91 112 IPR002885 -
Dod03g3108 345 Pfam PPR repeat 17 41 IPR002885 -
Dod03g3108 345 PANTHER - 34 326 - -
Dod03g3108 345 PANTHER - 2 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3108 Dod-Chr3 63672394 63673431 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3108 1 339 Glycoside Hydrolase AT3G49170 39.359 3.39e-81 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3108 - - vra:106778390 572.007