Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3098 ATGGCGACTCAACTCCTCAAACTCAAACTCAAACGCTTCTTCCCAATCACAAAACCCTCATCTTCCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTGCACGCGCTCCCACCACAACCTTAACTTCCCAGAATCTCGTAGAAACCGCCGTCTCCATCCTCACCCACCACCGTTCCAAGTCCCGCTGGACCGCCCTCCACTCTCTCTGCCGCTCCGGCTGCTTCAGCCCCACCCAGTTTTCCCAAATTGCCCTCCGCCTCAAGAGCAAACCCCACCTCGCCCTCAACTTCTTCCTCTTCACCAACTCCAAGTCCCTCTGCAACCACACCCTCCATTCCTACTCCACCATCGCTCACGTCCTCGCACGTGGCCGCCTCAAAACCCACGCCCAGAACGCCATCAGGCTCGCCATTCGCGCTTCCGAGCTTCAAAACGGCGACGAAGATTGTCGCTTCGACTCGCCGCCGTTGAACGTATTCGAGCACCTCGTGAGAACCTACCGAGAGTGTGATTCGGCTCCGTTTGTTTTCGATTTGCTGATTAGGGCTTGTTTGGATTCGAAAAAGGTTGAGCCTTCGATTGAGATCGTTAGGATGTTGATATCACGCGGGGTCAGCCCCAAAGTTTGCACCTTGAACAATTTGATTTCTAGGGTTTGCAGCATTAGGGGTTTTGAGGCTGGGTATGAGATTTACAGGGAGTTTTTTAGGGTGGGTGAGGAAAAAGATGAGATTTTGAAGAAGAGAGGTTTGGGTTTTAGGGTTTTCCCTAATGTGCATACTTATAATGCATTGATGCTGTGTTGTTATCAGGATGGTTTGGTGGAAAAGGTTCAAGAAATTTGGGATGAGATGGGTGAATTGGGGTGTATCCCCAATGCTTATAGCTATACTGTGTTGATGGCTGCCTTTTGTGATGAAGGGAGGATGGTGGATGCTGAGAGGTTATGGGAAGAAATGAGGAAGGAGAAAATGGAGTTTGGTGTGGTTTGTTACAATACTATAATTGGTGGATTGTGTAAGATTGGAGATGTTGGAAGAGCTGAAGAGTTTTTCAGGGAAATGCAATTCGGTGGTATTGCCAGCACTGATGCAACTTATGAGCATCTGGTCAAGGGATATTGTAGTATTGGGGATGTTCATTCAGCTGTTCTTGTGTATAAAGATATGTGTAGGAAGGGCTTTAGGCCTGATGCTTCAGTCCTTGACATGGTGGTTTGGTTACTTTGTGATAAGGGTAAGGTCGATGAAGCTCTGGGGTTTGTTAGGCATGCAGCTGGTAGATTTGATTTGGCTCCCAAGGGGAAGAGTTATGAAGCATTGATAAAGGGGCTGTGTTCTGAGGGGAGGGTGGAAGAAGCTTTGAAGCTTCAGGCTGAGATGGTAGGGAAAGGTTTTCAACCGAATTCAGAAATATATGGTGCTTTTATTGATGGGTACATTAGACAAGGGAAGGAGGATATGGCAGGAGCTTTGAGAAAAGAAATGCTGCAAAAACAGATGCAGAACTAA 1524 0.4783 MATQLLKLKLKRFFPITKPSSSSFSSSSSSSSSSSSSARAPTTTLTSQNLVETAVSILTHHRSKSRWTALHSLCRSGCFSPTQFSQIALRLKSKPHLALNFFLFTNSKSLCNHTLHSYSTIAHVLARGRLKTHAQNAIRLAIRASELQNGDEDCRFDSPPLNVFEHLVRTYRECDSAPFVFDLLIRACLDSKKVEPSIEIVRMLISRGVSPKVCTLNNLISRVCSIRGFEAGYEIYREFFRVGEEKDEILKKRGLGFRVFPNVHTYNALMLCCYQDGLVEKVQEIWDEMGELGCIPNAYSYTVLMAAFCDEGRMVDAERLWEEMRKEKMEFGVVCYNTIIGGLCKIGDVGRAEEFFREMQFGGIASTDATYEHLVKGYCSIGDVHSAVLVYKDMCRKGFRPDASVLDMVVWLLCDKGKVDEALGFVRHAAGRFDLAPKGKSYEALIKGLCSEGRVEEALKLQAEMVGKGFQPNSEIYGAFIDGYIRQGKEDMAGALRKEMLQKQMQN* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3098 507 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 11 505 - -
Dod03g3098 507 Pfam PPR repeat family 261 309 IPR002885 -
Dod03g3098 507 Pfam PPR repeat family 333 380 IPR002885 -
Dod03g3098 507 Pfam PPR repeat family 441 474 IPR002885 -
Dod03g3098 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Dod03g3098 507 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 11 505 - -
Dod03g3098 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 438 472 IPR002885 -
Dod03g3098 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Dod03g3098 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 331 IPR002885 -
Dod03g3098 507 Pfam PPR repeat 476 503 IPR002885 -
Dod03g3098 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Dod03g3098 507 MobiDBLite consensus disorder prediction 18 44 - -
Dod03g3098 507 Gene3D Tetratricopeptide repeat domain 326 423 IPR011990 GO:0005515
Dod03g3098 507 Gene3D Tetratricopeptide repeat domain 424 506 IPR011990 GO:0005515
Dod03g3098 507 Gene3D Tetratricopeptide repeat domain 10 240 IPR011990 GO:0005515
Dod03g3098 507 Gene3D Tetratricopeptide repeat domain 241 325 IPR011990 GO:0005515
Dod03g3098 507 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 332 366 IPR002885 -
Dod03g3098 507 TIGRFAM PPR: pentatricopeptide repeat domain 334 364 IPR002885 -
Dod03g3098 507 TIGRFAM PPR: pentatricopeptide repeat domain 370 403 IPR002885 -
Dod03g3098 507 TIGRFAM PPR: pentatricopeptide repeat domain 441 473 IPR002885 -
Dod03g3098 507 TIGRFAM PPR: pentatricopeptide repeat domain 264 298 IPR002885 -
Dod03g3098 507 TIGRFAM PPR: pentatricopeptide repeat domain 299 330 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3098 79 506 Glycosyltransferase AT1G05670 26.585 1.60e-40 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3098 - - gmx:100809831 651.358