Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3090 ATGACAAACGCAAAAGGTGGAACCATGTTAGTGGAGCGAAACGCTGGCATACACAGGCCGAAACTAGGAGCCATCTTGCACTCCGACCCGACGTCGCTTTACACTCAAAACCACGACGACGACCATCAGAACCACCGCCTGAGCAGCGCCTCTGCCGCCAGCCCCCGAAACAACAACTACTACTCCGGTGGCGACAACACAAGCAGCAGCAGCAACAATGCCTCCCCTTACACCATGTCCCCATATAACAACCAGCTAGCTCCTTCCTCTCCCTACAACAAATCCCCATGGCTCTTACCTTCACCCGCCATCAACCTCTTCCACCACCACCACAACCAAAACGACAGCTTCTACTCCCAAAACGGCCTCATCGGATCCCTAGTCCGCGAAGAAGGCCACATCTATTCCCTCGCCGTTTCCGGCGACTTGTTATACACCGGATCCGACAGCAAGAACATTAGAGTTTGGAAAGAACTCAAGGACTACGCTGGATTCAAATCGAGCTCTGGATTGGTGAAAACAATTGTTATGTCCGGCGAGAAAATCTTCACCGGCCACCAAGACGGGAAAATCAGGGTTTGGAAGGTTTCTTCCAAGGATCCAAGCACGCACAGGAGGATCGGAAGCTTGCCAACTTTCAAAGATTACGTGAAGAGCTCAATGAACCCCAAGAACTATGTCAAGGTTCGAAGGCACCGAAAAGCGGTGAAGGTGAAGCACTTCGACGCCGTTTCGAGCTTGAGCTTGGACGAGGAAGCGGGGCTGTTGTATTCTGGCTCCTGGGACAAGACGATTAAGGTGTGGAGGGTTTCAGATTCGAAGTGCTTGGAATCGATCAATGCTCACGACGACGCGGTTAACGCGGTGGTTGCGGCGTTCGAGGGGTTCGTTTTCACGGGGTCAGCGGATGGGACGGTGAAGATGTGGCGGAGGAGGGAGCAAGGGAGCAAGAGGACGAGGCACGTGATGGATAGTGTTCTGCTGAGGCAGGAGAACGCCGTGACCGCGCTCGCTGCTAACCGTTTGGCGGGGGTGGTTTACGGCGGGTCCTCCGACGGCTTGGTGAACTTCTGGGAGAGGGACGAGAAGAGCGGAGGGCTGTCTCACGGCGGAGTTTTGAAGGGACACAAGCTCGCCGTGCTTTGCCTCGCGGCGGCTGGGAAATTGGTGTTCAGCGGCTCCGCCGATAAGAACATATGCGTGTGGAAGCGCGATGAGAGTGGGGTCCACACATGCCTTTCGGTGCTCACCGGCCACACTGGGCCGGTAAAATGCATCGCAGTGGAGGAAGAGGAAGATGAAGAGGAAGGTCAACGCGGGAAGGTTGACCAAAGGTGGATTGTTTACACTGGGAGTTTGGATAAGTCCGTAAAGGTGTGGCGCGTGTCTGAACACGCGCCGGAGTTGAGGATGATCCAGTGGTGGCCCACGCCAAGCCGCGATGGGGTTGCCACCAGCGTCGGAGGGTTGAGTCAATATTCTTCGCCGGTCACAAATGCGAATAGTGCTAGCAACGCCATCAACTCTTATTATAATGCTAATAGCAATCTCAGCAACCTTCAAAACAATAGCAATAGCAATGGTGGTGTCTTCCAAAATAGGAGGCAGTTGTAA 1614 0.5421 MTNAKGGTMLVERNAGIHRPKLGAILHSDPTSLYTQNHDDDHQNHRLSSASAASPRNNNYYSGGDNTSSSSNNASPYTMSPYNNQLAPSSPYNKSPWLLPSPAINLFHHHHNQNDSFYSQNGLIGSLVREEGHIYSLAVSGDLLYTGSDSKNIRVWKELKDYAGFKSSSGLVKTIVMSGEKIFTGHQDGKIRVWKVSSKDPSTHRRIGSLPTFKDYVKSSMNPKNYVKVRRHRKAVKVKHFDAVSSLSLDEEAGLLYSGSWDKTIKVWRVSDSKCLESINAHDDAVNAVVAAFEGFVFTGSADGTVKMWRRREQGSKRTRHVMDSVLLRQENAVTALAANRLAGVVYGGSSDGLVNFWERDEKSGGLSHGGVLKGHKLAVLCLAAAGKLVFSGSADKNICVWKRDESGVHTCLSVLTGHTGPVKCIAVEEEEDEEEGQRGKVDQRWIVYTGSLDKSVKVWRVSEHAPELRMIQWWPTPSRDGVATSVGGLSQYSSPVTNANSASNAINSYYNANSNLSNLQNNSNSNGGVFQNRRQL* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3090 537 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 237 274 - -
Dod03g3090 537 ProSiteProfiles Trp-Asp (WD) repeats profile. 373 403 IPR001680 GO:0005515
Dod03g3090 537 Gene3D - 222 323 IPR015943 GO:0005515
Dod03g3090 537 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 10 475 IPR045182 -
Dod03g3090 537 Gene3D - 116 221 IPR015943 GO:0005515
Dod03g3090 537 ProSiteProfiles Trp-Asp (WD) repeats profile. 237 278 IPR001680 GO:0005515
Dod03g3090 537 Gene3D - 324 500 IPR015943 GO:0005515
Dod03g3090 537 MobiDBLite consensus disorder prediction 47 86 - -
Dod03g3090 537 SMART WD40_4 158 195 IPR001680 GO:0005515
Dod03g3090 537 SMART WD40_4 272 310 IPR001680 GO:0005515
Dod03g3090 537 SMART WD40_4 230 269 IPR001680 GO:0005515
Dod03g3090 537 SMART WD40_4 120 157 IPR001680 GO:0005515
Dod03g3090 537 SMART WD40_4 366 403 IPR001680 GO:0005515
Dod03g3090 537 SMART WD40_4 320 359 IPR001680 GO:0005515
Dod03g3090 537 SMART WD40_4 409 461 IPR001680 GO:0005515
Dod03g3090 537 PRINTS G protein beta WD-40 repeat signature 448 462 IPR020472 -
Dod03g3090 537 PRINTS G protein beta WD-40 repeat signature 297 311 IPR020472 -
Dod03g3090 537 PRINTS G protein beta WD-40 repeat signature 256 270 IPR020472 -
Dod03g3090 537 PANTHER EN/SPM-LIKE TRANSPOSON PROTEIN-LIKE 10 475 - -
Dod03g3090 537 ProSiteProfiles Trp-Asp (WD) repeats profile. 279 319 IPR001680 GO:0005515
Dod03g3090 537 SUPERFAMILY WD40 repeat-like 126 477 IPR036322 GO:0005515
Dod03g3090 537 Pfam WD domain, G-beta repeat 131 157 IPR001680 GO:0005515
Dod03g3090 537 Pfam WD domain, G-beta repeat 274 309 IPR001680 GO:0005515
Dod03g3090 537 Pfam WD domain, G-beta repeat 240 268 IPR001680 GO:0005515
Dod03g3090 537 Pfam WD domain, G-beta repeat 371 403 IPR001680 GO:0005515
Dod03g3090 537 Pfam WD domain, G-beta repeat 411 460 IPR001680 GO:0005515
Dod03g3090 537 MobiDBLite consensus disorder prediction 30 86 - -
Dod03g3090 537 CDD WD40 131 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3090 Dod-Chr3 63547186 63549007 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3090 144 403 Acyl Lipid Metabolism Gene Families AT3G18860 25.564 5.57e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3090 - - adu:107476730 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g3090 03 63547186 63549007 Dod03g3090 03 63547186 63549007 ECH