Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3050 ATGAGGAAAGAAAAAGGGATGGGTTTAGAGGTTGATAAGCTCTTGCTCTTTCTTCTTGTTACTGCTCTTCGTTTCCCTTCTTCATCCTTCGCTGAGATCTTTTTCGAAGAGAGATTCGAAGATGGATGGAAGAGCCGTTGGGTGTTATCTGATTGGAAAAGGAGTGAAGGAAAGGCTGGTACCTTCAAGCACACAGCAGGGAAATGGCCTGGAGATCCTGATGACAAAGGTCTCCAGACATATAATGATGCCAAGCATTATGCCATATCTGCAAAGATACCGGAGTTGAGCAACAAGAACAGAACTCTGGTGGTCCAGTATTCTATTAGGTTTGAGCAGGACATTGAATGCGGCGGTGGTTACATCAAACTTATGTCTGGCTATGTCAATCAGAAGAAGTTTGGCGGGGATACACCTTATAGTTTGATGTTTGGACCAGATATATGTGGCTCTCAGACCAAGAAGCTCCATGTTATACTATCATACCAGGGGCAGAATTACCCTGTTAGAAAGGATCTGCAATGTGAAACCGACAAATTGACTCATTTCTATACCTTTATTCTAAGGCCTGATGCCTCTTACAGTGTCCTTGTTGATAATCGAGAAAGAGATTCTGGAAGCATGTACACAGATTGGGACATTCTTCCACCAAGGAAAATCAAGGATATCAATGCAAAAAAGCCAGCAGACTGGGATGATAAAGAGTACATTGAAGACCCCAATGATGTCAAACCGGAGGGATATGATTCAATCCCAGCTGAAATTCCTGATCCAAAAGCGAAGAAGCCTGCTGACTGGGATGAGGATGAAGATGGCCTATGGAAGCCCCCCAAGATTCCTAATCCAGCATACAAAGGGCCATGGAAACGCAAGAAAATCAAGAACCCCAACTACAAGGGAAAGTGGAAGATTCCATGGATTGATAACCCAGAATTTGAGGATGATCCTGATCTTTATGTGATGAAACCAATAAAGTATGTGGGCATTGAAGTGTGGCAGGTGAAGGCTGGTTCAGTTTTCGACAACATCTTAATCTGTGACGACCCACAGGACGCAAGGCAAGTTGTGGAAGAATTTATGGCTAATAATAAAGAGGCTGAGAAAGAAGCTTTTGAAGAGGCAGAAAAGGAAAGAAGGGCTAGGGAAGAAGAGGAAGCACGTAGAGCTAGAGAAGATGGCGAAAGGAGGAGGAGGGAGAGGGATCCTAAATATAGAGATAAGAGGCGCCATAGAAGGCCGGATCCGCATGACTACATGGATGATTACCGTCATGATGAACTTTGA 1284 0.4393 MRKEKGMGLEVDKLLLFLLVTALRFPSSSFAEIFFEERFEDGWKSRWVLSDWKRSEGKAGTFKHTAGKWPGDPDDKGLQTYNDAKHYAISAKIPELSNKNRTLVVQYSIRFEQDIECGGGYIKLMSGYVNQKKFGGDTPYSLMFGPDICGSQTKKLHVILSYQGQNYPVRKDLQCETDKLTHFYTFILRPDASYSVLVDNRERDSGSMYTDWDILPPRKIKDINAKKPADWDDKEYIEDPNDVKPEGYDSIPAEIPDPKAKKPADWDEDEDGLWKPPKIPNPAYKGPWKRKKIKNPNYKGKWKIPWIDNPEFEDDPDLYVMKPIKYVGIEVWQVKAGSVFDNILICDDPQDARQVVEEFMANNKEAEKEAFEEAEKERRAREEEEARRAREDGERRRRERDPKYRDKRRHRRPDPHDYMDDYRHDEL* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3050 427 Coils Coil 356 399 - -
Dod03g3050 427 MobiDBLite consensus disorder prediction 364 401 - -
Dod03g3050 427 SUPERFAMILY Concanavalin A-like lectins/glucanases 30 230 IPR013320 -
Dod03g3050 427 PIRSF Calreticulin 11 427 IPR009169 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Dod03g3050 427 Pfam Calreticulin family 36 271 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Dod03g3050 427 Pfam Calreticulin family 272 345 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Dod03g3050 427 Gene3D - 32 387 - -
Dod03g3050 427 ProSitePatterns Calreticulin family signature 1. 110 125 IPR018124 GO:0005509
Dod03g3050 427 MobiDBLite consensus disorder prediction 231 245 - -
Dod03g3050 427 MobiDBLite consensus disorder prediction 364 427 - -
Dod03g3050 427 PANTHER CALRETICULIN-3 12 427 - -
Dod03g3050 427 MobiDBLite consensus disorder prediction 231 279 - -
Dod03g3050 427 SUPERFAMILY P-domain of calnexin/calreticulin 213 328 IPR009033 GO:0005509|GO:0005515
Dod03g3050 427 ProSitePatterns Calreticulin family signature 2. 142 150 IPR018124 GO:0005509
Dod03g3050 427 Gene3D Calreticulin/calnexin, P domain 206 326 IPR009033 GO:0005509|GO:0005515
Dod03g3050 427 PRINTS Calreticulin signature 138 154 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Dod03g3050 427 PRINTS Calreticulin signature 326 346 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Dod03g3050 427 PRINTS Calreticulin signature 293 312 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Dod03g3050 427 PRINTS Calreticulin signature 112 130 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Dod03g3050 427 PRINTS Calreticulin signature 255 277 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Dod03g3050 427 PRINTS Calreticulin signature 227 240 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Dod03g3050 427 MobiDBLite consensus disorder prediction 411 427 - -
Dod03g3050 427 MobiDBLite consensus disorder prediction 255 275 - -
Dod03g3050 427 PANTHER CALRETICULIN AND CALNEXIN 12 427 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3050 Dod-Chr3 63256788 63263866 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g3050 15 348 Miscellaneous Gene Families AT5G61790 34.447 3.05e-63 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3050 K08057 - gmx:100802428 694.115