Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2957 ATGACACCGTTTTCCTCTCGGTTCTGCCTTCTACTAACCTCATCCTTGATCGATCTCACTTCTCATCACCAGCGACTTAGCGTCGCTGTCCCTGTTCATGCATGCGTCTTCACTCGCTGCCATGCCATGCACGCTCTCGTCGGAGCCAAAACATTTTCCAGAACAAGCACCATCATCAGCCACCGCTGCTTCCGATCAGATCCCTCACTCTATGCCGAACTCATCCAGACCTACGCTCGCGATCGAGCGCTGCGTGATGGCAAGAAGCTCCACGCGCACCTAATCACCAACGGCTTCATCCGTTTCAACGTCGTCGCTTCCAACCTCTTATCCTTCTACGCTTCCTGCGGCCAACTCTCCCACACCCGTAAACTATTCGACAAAATTCCCACAACAAATATCCGCCGTTGGATCGCCCTCATCGGAGCCTGCGCTCGCTGCGGCTTCCATGACCTCGCCATCGCCGTGTTCTCCGAGATGCAAGCCACCCACGCGCCTAACCCCAACAACGTTTTCGTCATCCCCAGCGTTCTCAAAGCTTGCGCTCACTTGGGGGACCGAATCACCGGAGAGAAGATTCACGGCTTGCTTCTCAAGTGTTGTTTTGAGGTTGATGCTTTTGTGTCCACCGCGTTGATCGTTATGTACTCCAAGTGCGCGAGAGTTGAGGACGCGCGCAAGGTGTTTGATGGAATGGGTGTTAAGGATTTGGTGGCTTTGAACGCTGTTGTTGCTGGGTATGCTCAATTGGGGCTTCCAAGTGATGCTTTGGCCTTGGTGGAGGGAATGGCGTTGATGGGTTTGAAGCCAAATTTGGTGACTTGGAATACTTGGTTGTCTGGGTTTTCGCAAAAATGTGACCTTGCTATGGTTTCTGAGATTTTCAAGTTGATGGTTGAAGATGGTGTTGAGCCTGATGTGGCGTCTTGGACTTCTGTTATATCTGGGTTTGTGCAGAATTTTCGTAATGAGGAAGCTTTTGACATGTTTAAGCAAATGTTGCGGCATGGGTTCTGCCCAACTTCAGCTACTATCAGCACCCTTCGGCCTGCTTGTGCCACTGCAGCAAGAGGGAGGATTGGGAAGGAAATTCATGGCTATGCGGTGGTGATTGGGGTGGAGGAAGATATATATGTGAGGAATGCACTGGTTGACATGTATGCAAAATGCGGGTTCATTTCTGAAGCAAGGACACTATTTTGTATGATGCCTGAGAAGGACACGGTTACGTGGAACTCTATCATTTTTGGATATGCCAATCATGGGTGTATTGATGAAGCCGTTGAGCTCTTCAATCAGATGGAGATGGAAGGGAAGGCCAAGCTGGATCACTTAACTTTCACTGCGGCTCTCACTGCTTGCAGCCATGCAGGTGATATTGAACTTCGGCAGAGGCTGTTCAATACTATGCAAGAAAAGTATGGCATTGAGCCGACGCTGGAGCATTATGCATGCATCGTGGATCTTCTAGGTCGGGCAGGGGAACTAGAGGAGGCACATAGCATGATCAAGGCAATGCCTATTGAGCCTGACTTGTTTGTGTGGGGTGCATTGCTGGCTGCTTGCAGAAATCGTGGGCATGTAGAGCTTGCAGAAGTGGCTGCTAAGCATTTGTTGGAGTTGGAGCCCAAGAATGCTGGGAACCGTCTTCTGTTGGCCAGTGTATATGCCGATGCTGGCAAGTGGGCAAAAGTTGAGAGGATCAAGAGAAGGATGAAGAAGGGGAAGCTCAGAAAATTGCAAGGGTTGAGTTGGATAGATAATGTATAA 1770 0.5 MTPFSSRFCLLLTSSLIDLTSHHQRLSVAVPVHACVFTRCHAMHALVGAKTFSRTSTIISHRCFRSDPSLYAELIQTYARDRALRDGKKLHAHLITNGFIRFNVVASNLLSFYASCGQLSHTRKLFDKIPTTNIRRWIALIGACARCGFHDLAIAVFSEMQATHAPNPNNVFVIPSVLKACAHLGDRITGEKIHGLLLKCCFEVDAFVSTALIVMYSKCARVEDARKVFDGMGVKDLVALNAVVAGYAQLGLPSDALALVEGMALMGLKPNLVTWNTWLSGFSQKCDLAMVSEIFKLMVEDGVEPDVASWTSVISGFVQNFRNEEAFDMFKQMLRHGFCPTSATISTLRPACATAARGRIGKEIHGYAVVIGVEEDIYVRNALVDMYAKCGFISEARTLFCMMPEKDTVTWNSIIFGYANHGCIDEAVELFNQMEMEGKAKLDHLTFTAALTACSHAGDIELRQRLFNTMQEKYGIEPTLEHYACIVDLLGRAGELEEAHSMIKAMPIEPDLFVWGALLAACRNRGHVELAEVAAKHLLELEPKNAGNRLLLASVYADAGKWAKVERIKRRMKKGKLRKLQGLSWIDNV* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2957 589 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Dod03g2957 589 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Dod03g2957 589 PANTHER OS03G0271300 PROTEIN 65 588 - -
Dod03g2957 589 Gene3D Tetratricopeptide repeat domain 360 436 IPR011990 GO:0005515
Dod03g2957 589 Gene3D Tetratricopeptide repeat domain 299 359 IPR011990 GO:0005515
Dod03g2957 589 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Dod03g2957 589 Pfam E motif 528 587 IPR046848 -
Dod03g2957 589 TIGRFAM PPR: pentatricopeptide repeat domain 239 271 IPR002885 -
Dod03g2957 589 TIGRFAM PPR: pentatricopeptide repeat domain 409 438 IPR002885 -
Dod03g2957 589 TIGRFAM PPR: pentatricopeptide repeat domain 273 307 IPR002885 -
Dod03g2957 589 TIGRFAM PPR: pentatricopeptide repeat domain 309 341 IPR002885 -
Dod03g2957 589 Gene3D Tetratricopeptide repeat domain 56 170 IPR011990 GO:0005515
Dod03g2957 589 Gene3D Tetratricopeptide repeat domain 437 587 IPR011990 GO:0005515
Dod03g2957 589 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Dod03g2957 589 Pfam PPR repeat 137 161 IPR002885 -
Dod03g2957 589 Pfam PPR repeat 238 267 IPR002885 -
Dod03g2957 589 Pfam PPR repeat 210 233 IPR002885 -
Dod03g2957 589 Pfam PPR repeat 483 506 IPR002885 -
Dod03g2957 589 Pfam PPR repeat 273 303 IPR002885 -
Dod03g2957 589 Gene3D Tetratricopeptide repeat domain 171 298 IPR011990 GO:0005515
Dod03g2957 589 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 406 IPR002885 -
Dod03g2957 589 Pfam PPR repeat family 406 455 IPR002885 -
Dod03g2957 589 Pfam PPR repeat family 305 351 IPR002885 -
Dod03g2957 589 SUPERFAMILY TPR-like 364 546 IPR011990 GO:0005515
Dod03g2957 589 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 65 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2957 Dod-Chr3 61861113 61862949 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2957 124 587 Glycoside Hydrolase AT3G49170 32.200 1.58e-78 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2957 - - aip:107629077 873.618