Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2953 ATGTTGTCTGAATTGGGAAGGAGACCGATGCTTGGGAGTACCAGCGAAGGGTCTTTTGGTGATGAATTGGAGGAGGAGATAGGGATGTTGCTTCGCGAGCAACGTAATAGACAAGAGGCTAATGATCAAGAACGAGAACTCAATATCTTTAGGAGTGGATCGGCTCCTCCAACAGTTGAAGGTTCTTTGAGTGCAGTTGGAGGGTTGTTTGGTGGTGGTGGTGGTGCTAGTGGTGCCTTTTCGGAGTTTCTGGGTGCTAAAGATGGGAATGGAATTCTTTCTGAGGAGGAGCTCAGGTCTGATCCAGCTTATCTTTCATACTACTTCTCCAATGTGAATTTGAATCCTAGGCTTCCACCCCCTTTGGTGTCTAAGGAGGATTGGAGGTTTGCACAAAGACTTAAAGGTGGAGCCTCGGCTCTTGGTGGAATTGGAGATAGGAGGAGAGTGAATACGACTGATGATAATGGTGGTAGGTCATTGTTTTCAACCCCGCCGGGTTTCGGCATGAGGAAACAGGAGAGTGAGGAGGATATTGAAAAAACAAGAGGCTCGGCTGAGTGGGGTGGTGATGGACTGATTGGTTTGCCTGGCCTTGGGCTTAGGAGCAAACAGAAGAGCCTTGCAGAAATTATCCAGGATGATTTGGCACATAACACCTCTGTCACCACCAGCTTTCCTTCTCGGCCAGCCAGTCGTAATGCATTTGATGAAAATGTTGACATTATAAGTTCTGCTGATGCAGAGCTGGCTCGTGTACGCCGTGATTCCATGCCCACTGATGCTTTAAGATCTGGATCAAATGTTCAAGGGTCGTCTGTAGCCCAAAATATAGGCCCACCAGCTTCATATTCTTATGCTGCTGCTCTAGGATCTTCCTTATCAAGAAGTACCACTCCTGATCCACAACATGTTCCTAGGGCTCCCAGCCCGTGCCTCACACCAATTGGTGGCGGGAGAGCTGTTGCTGCTGACAAGAGAGGTGTTGCCAGTCAAGATGCATTTAATGGTGTTTCATCTGGGATCAAGGAGTCAGCTGATCTTGTGGCTGCATTGTCGGGTATGAAATTGTCAGCTGATGATGTGTTAGATGGTGAAAACCATTTGCCATCACAGGTTGAATCTGATATTGATAATCACCAGAGATATCTGTTTGGTATGCAAGGTGGTCAAGATCATGGCAAGCAACATTCATATTTAAAGAAGTCTGAATTGGGTAAGAGTAGTGGGAGTGTGTCAGACTTCAATAATCCTTCCTTGGATAGGCAAGTTGAGCTACAAAAGTCCACTGTTCCTTCCAATAACTCATATTTCAAAGGATCGCCTACCTCCCATTTTAATGCAGGAGGCAGTTTGGCAGCTCAGTACCCGTCTTTAGATGGTACAAATTCATCATTTACTAACTACGGGATGAGTGGATATGCTGGAAATCCAGCATTGGCATCCTTAATGACTAACCAACTTGGCACTGGTAATCTGCCACCCCTCTTCGAAAATGTTGCTGCAGCATCGGCAATGGCATCTCCTGGAATGGAGTCAAGAATTCTTGGAGCTGGGTTGGCTACTGGGTCAGATGCGCATAGTCTTGGTAGGATCGGGAATCAAATTGCAGGTGGTGCTCTTCAGGCTCCTTTTGTTGATCCTATGTATCTTCAGTACTTGAGGACATCGGAGTATGCTGCAGCACAACTTGCTGCTCTTAATGACCCCTCGGTGGACAGGAACTACTTGGGTAATTCATACATGAATTTACTTGAGCTTCAGAAAGCCTATCTTGGTTCTTTGCTCTCACCTCAGAAGTCTCAGTACAATGTTCCACTTGGTAGTAAATTAGGTAGCTCCAATCATCATGGTTATTATGGAAATCCTGCATATGGTGTTGGGTTGTCTTACCCAGGAAGTCCAATGGCAAACTCTGTTGTATCCTCTTCTCCCATTGGATCTGGAAGTCCTGTTAGGCACAATGAAATGAATATGCGTTTTGCTTCGGGAATGAGGAATTTAGCTGGGGTTATGGGACCTTGGCATGTAGATGCTGCGAGCATGGATGAAAGCTTTGCTTCTTCTCTGTTGGAAGAGTTTAAAAGCAATAAAACCAAGTGTTTTGAGCTTGCTGAAATTGCTGGTCATGTTGTTGAATTCAGTGCTGATCAATATGGGAGCCGATTTATTCAACAAAAGCTTGAAACAGCAACTACAGAAGAAAAAAACATGGTTTATCAGGAGATTATGCCACAAGCTCTTGCTTTGATGACTGATGTCTTTGGTAATTATGTGGTTCAAAAGTTTTTTGAACATGGACTTGCATCCCAAAGAAGAGAATTAGCCAACAAGCTTCCTGGCCATGTTCTGACACTTAGCCTTCAAATGTATGGTTGTCGGGTCATCCAGAAGGCCATCGAAGTTGTTGATCTGGATCAGAAGATAGAAATGGTTCAAGAGCTTGATGGTAATGTGATGCGGTGTGTGCGTGATCAGAATGGTAACCATGTCATTCAGAAGTGTATTGAATGTGTTCCTGAAGATGCAATCCATTTTATTGTCTCAACATTTTTTGATCAAGTTGTGACACTTTCAACCCATCCATATGGTTGCCGAGTGATACAAAGAGTACTGGAGCACTGCAAAGACCTTACAACACAGCAGAAAGTTATGGATGAGATTTTAGGAGCAGTTAGCATGTTAGCTCAAGATCAGTATGGAAACTATGTTGTTCAGCATGTACTGGAACATGGGAGACCTCATGAGCGTTCTGCAATTATAAAGGAATTAGCTGGCAAGATAGTTCAGATGAGTCAACAGAAGTTTGCGTCTAATGTTGTGGAGAAATGTTTGACCTTTGGGGGACCTTCTGAACGCCAATTACTAGTGAATGAGATGCTTGGCTCCACAGATGAAAATGAGCCTCTTCAGGCAATGATGAAAGATCAATTTGCAAATTATGTCGTACAAAAGGTTCTGGAAACTTGTGATGACCAACAGCGTGAGCTGATTCTTTCGCGAATTAAGGTCCATCTGAATGCATTGAAAAAGTACACCTATGGAAAGCATATTGTCGCACGTGTAGAGAAACTTGTCGCTGCTGGAGTTATGGCATGCCAAGGTGTTACATGTAGTCGTTTGCCAACCAGTTATCTAATTCATTGCAGAAAGGAGAATTGCTGCTCAGTCTCTTCAGCCTGCTTAGGTGGCATAGGAAAATAA 3204 0.4419 MLSELGRRPMLGSTSEGSFGDELEEEIGMLLREQRNRQEANDQERELNIFRSGSAPPTVEGSLSAVGGLFGGGGGASGAFSEFLGAKDGNGILSEEELRSDPAYLSYYFSNVNLNPRLPPPLVSKEDWRFAQRLKGGASALGGIGDRRRVNTTDDNGGRSLFSTPPGFGMRKQESEEDIEKTRGSAEWGGDGLIGLPGLGLRSKQKSLAEIIQDDLAHNTSVTTSFPSRPASRNAFDENVDIISSADAELARVRRDSMPTDALRSGSNVQGSSVAQNIGPPASYSYAAALGSSLSRSTTPDPQHVPRAPSPCLTPIGGGRAVAADKRGVASQDAFNGVSSGIKESADLVAALSGMKLSADDVLDGENHLPSQVESDIDNHQRYLFGMQGGQDHGKQHSYLKKSELGKSSGSVSDFNNPSLDRQVELQKSTVPSNNSYFKGSPTSHFNAGGSLAAQYPSLDGTNSSFTNYGMSGYAGNPALASLMTNQLGTGNLPPLFENVAAASAMASPGMESRILGAGLATGSDAHSLGRIGNQIAGGALQAPFVDPMYLQYLRTSEYAAAQLAALNDPSVDRNYLGNSYMNLLELQKAYLGSLLSPQKSQYNVPLGSKLGSSNHHGYYGNPAYGVGLSYPGSPMANSVVSSSPIGSGSPVRHNEMNMRFASGMRNLAGVMGPWHVDAASMDESFASSLLEEFKSNKTKCFELAEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVYQEIMPQALALMTDVFGNYVVQKFFEHGLASQRRELANKLPGHVLTLSLQMYGCRVIQKAIEVVDLDQKIEMVQELDGNVMRCVRDQNGNHVIQKCIECVPEDAIHFIVSTFFDQVVTLSTHPYGCRVIQRVLEHCKDLTTQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGRPHERSAIIKELAGKIVQMSQQKFASNVVEKCLTFGGPSERQLLVNEMLGSTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGVMACQGVTCSRLPTSYLIHCRKENCCSVSSACLGGIGK* 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2953 1067 ProSiteProfiles Pumilio RNA-binding repeat profile. 814 849 IPR001313 GO:0003723
Dod03g2953 1067 ProSiteProfiles Pumilio RNA-binding repeat profile. 742 777 IPR001313 GO:0003723
Dod03g2953 1067 MobiDBLite consensus disorder prediction 293 319 - -
Dod03g2953 1067 MobiDBLite consensus disorder prediction 25 44 - -
Dod03g2953 1067 Pfam Pumilio-family RNA binding repeat 893 924 IPR001313 GO:0003723
Dod03g2953 1067 Pfam Pumilio-family RNA binding repeat 782 815 IPR001313 GO:0003723
Dod03g2953 1067 Pfam Pumilio-family RNA binding repeat 854 889 IPR001313 GO:0003723
Dod03g2953 1067 Pfam Pumilio-family RNA binding repeat 825 848 IPR001313 GO:0003723
Dod03g2953 1067 Pfam Pumilio-family RNA binding repeat 747 777 IPR001313 GO:0003723
Dod03g2953 1067 Pfam Pumilio-family RNA binding repeat 928 961 IPR001313 GO:0003723
Dod03g2953 1067 Pfam Pumilio-family RNA binding repeat 710 744 IPR001313 GO:0003723
Dod03g2953 1067 Pfam Pumilio-family RNA binding repeat 973 1002 IPR001313 GO:0003723
Dod03g2953 1067 MobiDBLite consensus disorder prediction 141 175 - -
Dod03g2953 1067 CDD Pumilio 707 1022 IPR033712 GO:0003723
Dod03g2953 1067 ProSiteProfiles Pumilio RNA-binding repeat profile. 887 922 IPR001313 GO:0003723
Dod03g2953 1067 Pfam Nucleic acid binding protein NABP 307 705 IPR012940 -
Dod03g2953 1067 ProSiteProfiles Pumilio RNA-binding repeat profile. 959 1000 IPR001313 GO:0003723
Dod03g2953 1067 SUPERFAMILY ARM repeat 689 1023 IPR016024 -
Dod03g2953 1067 ProSiteProfiles Pumilio RNA-binding repeat profile. 778 813 IPR001313 GO:0003723
Dod03g2953 1067 PANTHER PUMILIO HOMOLOG 1-RELATED 38 1034 - -
Dod03g2953 1067 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 38 1034 - -
Dod03g2953 1067 ProSiteProfiles Pumilio RNA-binding repeat profile. 850 886 IPR001313 GO:0003723
Dod03g2953 1067 Gene3D - 686 1030 IPR011989 -
Dod03g2953 1067 SMART pum_5 742 777 IPR001313 GO:0003723
Dod03g2953 1067 SMART pum_5 850 886 IPR001313 GO:0003723
Dod03g2953 1067 SMART pum_5 887 922 IPR001313 GO:0003723
Dod03g2953 1067 SMART pum_5 965 1000 IPR001313 GO:0003723
Dod03g2953 1067 SMART pum_5 706 741 IPR001313 GO:0003723
Dod03g2953 1067 SMART pum_5 778 813 IPR001313 GO:0003723
Dod03g2953 1067 SMART pum_5 923 958 IPR001313 GO:0003723
Dod03g2953 1067 SMART pum_5 814 849 IPR001313 GO:0003723
Dod03g2953 1067 ProSiteProfiles Pumilio RNA-binding repeat profile. 923 958 IPR001313 GO:0003723
Dod03g2953 1067 MobiDBLite consensus disorder prediction 1 44 - -
Dod03g2953 1067 ProSiteProfiles Pumilio RNA-binding repeat profile. 706 741 IPR001313 GO:0003723
Dod03g2953 1067 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 686 1026 IPR033133 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2953 Dod-Chr3 61836835 61843878 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2953 K17943 - gmx:100787039 1721.06