Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2948 ATGGGGCTATTTCTTGCATCCTTTTCTTTTAGTCCTCGTGAGCAGCAGCAGATTAGCTTTCAGGAGTTTAAAAATAAGCTTTTGGAACCAGGATTAGTAGACCATATTGTTGTTTCAAATAAGTCAGTTGCCAAAATATATGTGAGGAATACTCCCCGTAACCAAACAGACAGTGAAGTTGTCCAAGGAACACTCCCTGCAAAGGGAACTGGTGGCCAATATAAATACTATTTCAATATTGGAAGTGTTGAGTCTTTTGAGGAGAAGTTAGAGGAAGCGCAAGAAGCACTAGGCATTGACCCCCATGATTACGTCCCGGTTACATATTCTTCTGAAATGGTTTGGTACCAGGAATTGTTGAGATTTGCTCCAACACTGTTGCTTTTGGGATCTCTCTTATATATGGGAAGGAGAATGCAAGGTGGACTTGGTGTTGGAGGTGGTGGTGGTGGTAAGGGTGCTCGTGGTATATTCAACATAGGAAAAGCTCATGTTACTAAAGTTGACAAAAATGCCAAAAACAAGGTCTTTTTTAAAGATGTTGCTGGCTGTGATGAGGCAAAGCAAGAAATTATGGAGTTTGTCCACTTCCTCAAGAGCCCAAAGAAATATGAAGAACTAGGGGCAAAAATTCCCAAAGGTGCTCTTCTAGTCGGTCCTCCGGGCACAGGAAAAACCCTTTTAGCAAAAGCCACTGCTGGGGAATCTGGTGTGCCATTCCTTTCTATATCTGGTTCTGATTTCATGGAAATGTTCGTCGGTGTTGGACCATCTAGGGTGAGAAACTTGTTTCAGGAAGCAAGGCAGTGTGCTCCAAGTATAATATTTATTGATGAGATTGATGCAATTGGTCGAGCAAGGGGGCGTGGAGGTTTCTCTGGTGCAAATGATGAGCGTGAAAGTACGTTAAATCAATTGTTGGTGGAGATGGATGGTTTTGGAACTACTTCTGGGGTTGTCGTACTTGCAGGAACAAATAGACCTGATATCTTAGATAAAGCTCTACTTCGGCCTGGGCGATTTGATCGCCAGATAAGCATTGATAAACCTGATATTAAGGGTCGTGACCAGATATTTCAGATCTACTTGAAAAGGATCAAACTTGACCATGAGCCTTCATATTATTCGCAAAGGCTTGCAGCCCTTACACCAGGATTTGCTGGAGCAGACATCGCTAATGTTTGCAATGAAGCTGCTCTGATTGCCGCAAGAGGTGAGGAAACCCAAGTTACAATGGAACATTTTGAAGCAGCTATTGATAGGATCATTGGTGGTTTGGAGAAGAAGAACAGGGTAATAAGCAAGCTGGAAAGGCGTACCGTTGCTTACCATGAATCAGGCCATGCTGTTGCTGGCTGGTTCTTGGAACATGCTGAACCCTTGTTGAAAGTAACCATAGTTCCCCGTGGCACAGCTGCCCTTGGGTTTGCCCAGTATGTTCCAAATGAGAACCTTCTCATGACAAAGGAGCAGCTGTTTGATATGACTTGTATGACCCTCGGTGGTCGTGCCTCTGAGCAGGTTCTCATTGGGAAAATCTCAACAGGAGCACAAAATGACTTGGAAAAGGTGACCAAGATGACGTACGCCCAAGTAGCAGTCTATGGTTTTAGTGACAAAGTTGGTCTCCTCTCTTTCCCTCCAAGAGAGGACTCGTTTGAGATGACCAAACCATACAGCAGCAAGACTGCTGCAATCATCGATAATGAAGTCCGAGAGTGGGTGAACAAAGCTTATGAGCGCACTGTACAGCTCATTGAGGAGCACAAGGAGCAAGTTGCTGAGATTGCAGAGTTGCTGCTTGAAAAAGAAGTACTTCACCAGGATGACTTGCTTCGAGTTTTGGGTGAGCGACCATTCAAGTCTCTGGAACCCACGAATTATGATAGATTTAAGCAAGGTTTTCAAGAGGTTGAGGAAAAGGTTGTAGAAAGCACTGTAGAAGGCCCTGAGGAGAGTGGTGGTGGTTCTTCACCGTTAGAGCCCCAAGTTGTTCCAACATAG 2004 0.4436 MGLFLASFSFSPREQQQISFQEFKNKLLEPGLVDHIVVSNKSVAKIYVRNTPRNQTDSEVVQGTLPAKGTGGQYKYYFNIGSVESFEEKLEEAQEALGIDPHDYVPVTYSSEMVWYQELLRFAPTLLLLGSLLYMGRRMQGGLGVGGGGGGKGARGIFNIGKAHVTKVDKNAKNKVFFKDVAGCDEAKQEIMEFVHFLKSPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGANDERESTLNQLLVEMDGFGTTSGVVVLAGTNRPDILDKALLRPGRFDRQISIDKPDIKGRDQIFQIYLKRIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGEETQVTMEHFEAAIDRIIGGLEKKNRVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLMTKEQLFDMTCMTLGGRASEQVLIGKISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPPREDSFEMTKPYSSKTAAIIDNEVREWVNKAYERTVQLIEEHKEQVAEIAELLLEKEVLHQDDLLRVLGERPFKSLEPTNYDRFKQGFQEVEEKVVESTVEGPEESGGGSSPLEPQVVPT* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2948 667 Pfam ATPase family associated with various cellular activities (AAA) 216 348 IPR003959 GO:0005524|GO:0016887
Dod03g2948 667 Pfam Peptidase family M41 431 613 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Dod03g2948 667 ProSitePatterns AAA-protein family signature. 319 337 IPR003960 GO:0005524|GO:0016887
Dod03g2948 667 Gene3D Peptidase M41 432 632 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Dod03g2948 667 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 115 615 IPR005936 GO:0004176|GO:0004222|GO:0016020
Dod03g2948 667 Pfam FtsH Extracellular 3 102 IPR011546 GO:0004176|GO:0004222|GO:0005524|GO:0008270|GO:0016021
Dod03g2948 667 SMART AAA_5 211 351 IPR003593 -
Dod03g2948 667 Pfam AAA+ lid domain 378 417 IPR041569 -
Dod03g2948 667 Gene3D - 350 426 - -
Dod03g2948 667 PANTHER ATP-DEPENDENT PROTEASE 2 666 - -
Dod03g2948 667 MobiDBLite consensus disorder prediction 641 667 - -
Dod03g2948 667 Gene3D - 159 348 IPR027417 -
Dod03g2948 667 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 2 653 IPR005936 GO:0004176|GO:0004222|GO:0016020
Dod03g2948 667 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 10, MITOCHONDRIAL-LIKE 2 666 - -
Dod03g2948 667 Gene3D - 1 114 - -
Dod03g2948 667 SUPERFAMILY FtsH protease domain-like 432 623 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Dod03g2948 667 CDD AAA 212 349 - -
Dod03g2948 667 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 422 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2948 Dod-Chr3 61740399 61746921 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2948 1 667 Miscellaneous Gene Families AT2G29080 83.582 0.0 1103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2948 K08956 - gmx:100806656 1147.5