LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod03g2917	ATGGCTTCCCAGGCTAGCCTTCTCCTTCAAAAACAGCTCAAAGATCTTTGCAAGAACCCCGTTGATGGGTTCTCCGCAGGTTTGGTGGACGAAAGCAACATCTTTGAATGGAGTGTCACCATAATTGGACCCCCGGATACTCTCTATGAGGGAGGATTCTTCAATGCCACTATGAGCTTTCCATCCAATTACCCTAATAGCCCTCCATCAGTGAAATTCACCTCAGAGATATGGCACCCAAATGTATATCCTGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCCGGTGAGGACCCGAATGGTTATGAACTTGCGAGCGAGCGCTGGACACCTGTTCATACAGTAGAGAGTATAGTCCTGAGTATCATATCAATGCTTTCAAGTCCTAATGATGAGTCTCCTGCTAATGTTGAAGCTGCAGTTCTGATGTATGATCCAATATACATCAGCTTATAG	459	0.4553	MASQASLLLQKQLKDLCKNPVDGFSAGLVDESNIFEWSVTIIGPPDTLYEGGFFNATMSFPSNYPNSPPSVKFTSEIWHPNVYPDGRVCISILHPPGEDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAVLMYDPIYISL*	153

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod03g2917	152	ProSitePatterns	Ubiquitin-conjugating (UBC) active site signature.	78	93	IPR023313	-
	Dod03g2917	152	PANTHER	UBIQUITIN-CONJUGATING ENZYME E2	2	141	-	-
	Dod03g2917	152	Gene3D	Ubiquitin Conjugating Enzyme	2	147	IPR016135	-
	Dod03g2917	152	CDD	UBCc	17	144	IPR000608	-
	Dod03g2917	152	SUPERFAMILY	UBC-like	3	146	IPR016135	-
	Dod03g2917	152	PANTHER	UBIQUITIN-CONJUGATING ENZYME E2 13	2	141	-	-
	Dod03g2917	152	ProSiteProfiles	Ubiquitin-conjugating (UBC) core domain profile.	4	152	IPR000608	-
	Dod03g2917	152	Pfam	Ubiquitin-conjugating enzyme	9	144	IPR000608	-
	Dod03g2917	152	SMART	ubc_7	7	148	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod03g2917	Dod-Chr3	61336849	61340396	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod03g2917	11	131	Miscellaneous Gene Families	AT3G17000	32.308	4.46e-14	66.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod03g2917	K10575		-	gmx:100305813	260.766

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod03g2917	03	61336849	61340396	Dod03g2917	03	61336849	61340396	ECH