Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dod03g2884 | ATGATGTTTCATGGAGCTAAAGCCACTAACCTAAACCCAACACAAGCAGCTACTCGATTACTCCTCCTCCATCATCGTTGCCGTTATCATGTTCATGCCAAAAAACCTCAAACTCAAAATGCTTCTTCTTCTTCTATTTCATCAAAGCTTCCCAATAACAATCGAAATCGGAAGCGAATTCCTTTCATCACAGAACTCAAAGAGCTTCAAGACCCACAACAAGCACTCTCTCTTTTCCAACATTACAAGGAACGCGGCTTCAAGCACCACTACCCTTCCTACGCTGCTTTGCTCTACAAGCTTGCTCGTTCTAGAAGCTTCGATTCCGTTGAAACCCTTCTCACTCACATCCAACAAACCTCATTGCACTGCAGAGAGAGCCTCTTCGTTGCACTCTTTCAACACTACGCTAAATCCTCGCTCCCCGAAAAGGCCACCGAACTTTTTCACCGAATGCCGGATTTTAACTGCGCCCGAACCTTGCAGTCCTTAAACGCGCTTCTTAACGTTTTGGTTGACAGCGACATGTTCGATGAGGCCAATGATGTTTTTTTGAAGTCCTATGAAATGGGGTTTCGTCCAAACACGGTTACTTTCAATGTTATGATAAAGGGGTGGTTGGGCAAAGGTGAGTTTGGGAAGGCGTGTGACGCGTTTGATGAAATGCTTCAGAGGAAAGTGCAGCCTAGTGTTGTGACTTATAACAGTTTAATTGGGTTTTTGTGTAGAAAGGGTGATTTGGATGAAGCGATGGCCTTGCTTGATGACATGAACAAGAAAGGGAAGTATGCGAATGAGGTGACCTATGGGCTTTTGATGGAAGGGTTGTGCAAGGTGGACAAGTATGATGAAGCTAAGAAGTTATTGTTTGATATGGCGTATCGTGGGTGTAAGCCTCGGCTGGTTAATTTCAGTGTTTTGATGAATGATCTTGGAAGGAGAGGGAAGATCGAGGAGGCAAAGGCTGTGCTTCACGAGATGAAGAAGAGGCGGGTGAAGCCGGATGTTGTCACGTATAACATATTGATAAATTATCTTTGCAAGGGAGGGAAGATGGCGGAGGCTTACAAGGTGTTGATTGAGATGCGGATTGGGGGCTGTGAGCCGAATGCGGCAACATACAGGATGATGGTTGATGGTTTATGCAGGGTTGGGGATTTTGAGATGGGTCTGAATGTTTTGAATGCAATGCTAACCAGTGGACACTGCCCGCGTACCAAAACGTTTAACTGTTTGTTTGTTGGGTTGTTGAAGTCTGGGAATGCTGATGGTGCTCGCTTTGTTTTTGAAGAGATGGAGAAGAGGAAGTTAGAATTTGACTTGGAGAGCTGGGAGACTATAGTGAAGTGTGCTTGCAGTGAGGATAAGGGTGTAAGTGAGCTTATGACTGAACTTACATCTTATCCATCCAATGCATTAGCTAAGGAAGACATTGTTTAG | 1440 | 0.4479 | MMFHGAKATNLNPTQAATRLLLLHHRCRYHVHAKKPQTQNASSSSISSKLPNNNRNRKRIPFITELKELQDPQQALSLFQHYKERGFKHHYPSYAALLYKLARSRSFDSVETLLTHIQQTSLHCRESLFVALFQHYAKSSLPEKATELFHRMPDFNCARTLQSLNALLNVLVDSDMFDEANDVFLKSYEMGFRPNTVTFNVMIKGWLGKGEFGKACDAFDEMLQRKVQPSVVTYNSLIGFLCRKGDLDEAMALLDDMNKKGKYANEVTYGLLMEGLCKVDKYDEAKKLLFDMAYRGCKPRLVNFSVLMNDLGRRGKIEEAKAVLHEMKKRRVKPDVVTYNILINYLCKGGKMAEAYKVLIEMRIGGCEPNAATYRMMVDGLCRVGDFEMGLNVLNAMLTSGHCPRTKTFNCLFVGLLKSGNADGARFVFEEMEKRKLEFDLESWETIVKCACSEDKGVSELMTELTSYPSNALAKEDIV* | 480 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dod03g2884 | 479 | Gene3D | Tetratricopeptide repeat domain | 62 | 212 | IPR011990 | GO:0005515 | |
| Dod03g2884 | 479 | Gene3D | Tetratricopeptide repeat domain | 214 | 361 | IPR011990 | GO:0005515 | |
| Dod03g2884 | 479 | Gene3D | Tetratricopeptide repeat domain | 362 | 476 | IPR011990 | GO:0005515 | |
| Dod03g2884 | 479 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 300 | 334 | IPR002885 | - | |
| Dod03g2884 | 479 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 160 | 194 | IPR002885 | - | |
| Dod03g2884 | 479 | PANTHER | TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED | 24 | 467 | - | - | |
| Dod03g2884 | 479 | Pfam | PPR repeat | 197 | 226 | IPR002885 | - | |
| Dod03g2884 | 479 | Pfam | PPR repeat | 130 | 157 | IPR002885 | - | |
| Dod03g2884 | 479 | Pfam | PPR repeat | 408 | 436 | IPR002885 | - | |
| Dod03g2884 | 479 | Pfam | PPR repeat | 304 | 331 | IPR002885 | - | |
| Dod03g2884 | 479 | TIGRFAM | PPR: pentatricopeptide repeat domain | 267 | 299 | IPR002885 | - | |
| Dod03g2884 | 479 | TIGRFAM | PPR: pentatricopeptide repeat domain | 197 | 230 | IPR002885 | - | |
| Dod03g2884 | 479 | TIGRFAM | PPR: pentatricopeptide repeat domain | 408 | 440 | IPR002885 | - | |
| Dod03g2884 | 479 | TIGRFAM | PPR: pentatricopeptide repeat domain | 304 | 336 | IPR002885 | - | |
| Dod03g2884 | 479 | TIGRFAM | PPR: pentatricopeptide repeat domain | 373 | 404 | IPR002885 | - | |
| Dod03g2884 | 479 | TIGRFAM | PPR: pentatricopeptide repeat domain | 337 | 371 | IPR002885 | - | |
| Dod03g2884 | 479 | TIGRFAM | PPR: pentatricopeptide repeat domain | 232 | 263 | IPR002885 | - | |
| Dod03g2884 | 479 | MobiDBLite | consensus disorder prediction | 35 | 55 | - | - | |
| Dod03g2884 | 479 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 230 | 264 | IPR002885 | - | |
| Dod03g2884 | 479 | MobiDBLite | consensus disorder prediction | 33 | 55 | - | - | |
| Dod03g2884 | 479 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 195 | 229 | IPR002885 | - | |
| Dod03g2884 | 479 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 370 | 404 | IPR002885 | - | |
| Dod03g2884 | 479 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 265 | 299 | IPR002885 | - | |
| Dod03g2884 | 479 | PANTHER | OS05G0548600 PROTEIN | 24 | 467 | - | - | |
| Dod03g2884 | 479 | Pfam | PPR repeat family | 229 | 278 | IPR002885 | - | |
| Dod03g2884 | 479 | Pfam | PPR repeat family | 334 | 383 | IPR002885 | - | |
| Dod03g2884 | 479 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 405 | 439 | IPR002885 | - | |
| Dod03g2884 | 479 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 335 | 369 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dod03g2884 | 30 | 456 | Miscellaneous Gene Families | AT4G11690 | 26.712 | 2.07e-47 | 170 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Dod03g2884 | - | - | gmx:100776556 | 660.218 |