Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2863 ATGGATAAAGCGAAACCAAAACGTGTTACCTTCACGAAGGAACCCTACATTGAGGATGCAGGCCCACGCAGAATAAAGAGCATGAAGTTCGGGACGTTATCAGAGTCAGAGATTAGTAAGATTGCGGAAGTTCAAGTGTACAGAGCTGCTTACTATACTGAGGACAAAAAGCCCGTCGATGGTGGCTTGTTGGATCCACGCATGGGCCCTGCTAATAGAGAGAGTCTTCCATGCATGACATGCGATGCAAAATTTCTTGATTGTCCAGGGCACTATGGATACTTAAACCTTGCCCTTCCCGTTTTTAATGTTGGATACTTGAGTAAAATTGTGGAAATACTGAAGTCCATTTGTAAGGGCTGTGCTCGTATTCTCCTCAACGAAGAGAAACGGAAAGAACATTTGAAGAAAATGAGAAACCCCAAAATCGAGGCACTGACAAAGATTGATATAGCAAAAAAAGTTGTAGAGTTATGTAGCAAAGTAGCGAAATGCCCTAGATGTGGATATTTGAATGGTTCAGTAAAGAAGGTTGTCTCTACACTAAAAATCATTCATGATCGGTCAAAATGTAGTGATAGTAGTGTGGAAGAGTTCCAATCAGCCCTTTCTCATACAAGAGAATCTAGGGTGACCAGCAACATGGATACTCATATTCTTAACCCTTTCCTAGCTCTTTCCCTGTTCAAAAGAATGCCTGATGAGGACTGTGAATTACTTTATCTTGATGAAAGACCAGAGAAACTTATCATGACAAATGTTGCAGTGCCCCCTTTAGCTATTCGGCCTTCTGTTATAATGGATGGATCACAGAGCCATGAAAATGACTTAACAGAGAGGATAAAGCAGATAATCCAAGCTAATGCTGTTGTGTGCCAAGAATTACAAGAATCAAGTGGTTCATTCAGATCTCTGGATGGTTGGGAAATGCTTCAATTTGAGGTTGCTCAATTCATAAATAGTGATGTTCGTGGTATACCGTTTAGTATGCAACGGGATAAGTCATTGGCTGGTTTGATTCAGCGCCTTAAAGGGAAGCAGGGACGTTTTCGTGGCAACTTATCCGGGAAACGTGTTGAATTTACTGGCAGGACAGTTATTTCACCAGATCCTAATTTAAAGATTTCTGAGGTTGCAATACCCATCCATATGGCTCGTATATTGACTTATCCTGAGCGTGTTTCACATCACAACATTGAGAAGCTGAGACAATGTGTAAGAAATGGTCCTGATAAGTATCCTGGTGCAAAGATGATTAGGCATGCTGGAGGTCACTCAAGGTCCTTACAAATTCCTGCTAGGAAGCGCATTGCAGATGAGCTGAAATTTGGTGATATTATTGAACGCCATTTGGAAGATGGTGATGTAGTTCTTTTCAATAGACAGCCAAGCTTGCATCGGATGTCTATAATGTGTCATAGGGCAAGGATTATGCCTTGGAGAACTTTGAGATTCAATGAATCTGTATGCAATCCATATAATGCTGACTTTGATGGTGACGAGATGAACATACATGTTCCGCAGACTGAGGAGGCACGGACAGAGGCTATTTTATTGATGGGGGTGCAAAACAATTTGTGCACACCAAAAAATGGCGAAATTCTGGTTGCCTCTACTCAAGACTTTTTAACCTCTTCGTTTCTCATAACTAGAAAAGACACTTTTTATGATCGTTCTACTTTCTCACTTATTTGCTCATACATGGGGGATGGCATGGATGATGTTGATCTGCCAACTCCTGCAATTATTAAGCCTGTTGAGCTTTGGAGTGGTAAACAGTTATTTAGCGTTCTGTTGCGCCCACATGCAAATGTGAGGGTCTATTTGAATCTTACTGTCAAGGAGAAAATATACAGCACAAAGCTTGATGATAGGAAAAGAGAACTGAAAACAATGTGCCCAAATGATGGGTTTGTTTATTTTCGCAATAGCGAGTTGATATCTGGACAACTTGGAAAGGTGACTTTAGGAAATGGAAATAAGGATGGACTTTTCTCCGTGCTACTAAGAGACTATAAAGCACATGCTGCTGCTGCTTGCATGAATCGTCTTGCCAAATTGAGTGCTCGATGGATAGGCAATCATGGATTCTCAATAGGCATTGATGATGTCCAACCAAAAGAGATTTTGATCAAGAAGAAAGATGCAACAATATCTGATGGTTATAAAAAATGTGATGGTTTTATAGAAGCTTTCAATAAAGGAAAGCTAGAGCTGAAAGCTGGTTGTGACGCTGCTCAGACGTTAGAGACTCTGATAACTGGTGTGTTGAATGGCATACGAGATACAGCGGGGAAGGTTTGCATGCAAACCCTGCATTGGAGAAATAGTCCCTTGATCATGTCACAGTGTGGCTCCAAAGGATCTCCTATTAATATCAGTCAGATGGTTGCCTGTGTTGGTCAACAATCAGTTGGAGGTCGTCGCGCTCCTAATGGGTTCATAGACCGTAGCCTTCCTCATTTCCCTAGAAAAGCAAAAACCCCTGGTGCTAAAGGTTTTGTTGCTAATTCCTTTTACAGTGGATTGTCTGCTACTGAGTTTTTCTTCCACACAATGGGAGGGCGAGAAGGGCTTGTTGATACAGCGGTTAAAACTGCTGACACTGGATACATGTCTCGTAGATTAATGAAATGTCTGGAGGATTTGTTTTTACATTATGATTACACTGTACGGAATGCTGGTGGTGGTATTGTTCAATTTTGTTATGGAGATGATGGCATGGATCCAGCAGGCATGGAGGGAAAAGATGGAAAACCATTAAATTTTGAGCGGTTGTTTTTGAGAAGCAAGGCCATATGTCCTGGCGATGGGGATGATGATATCTTATCTTCCTCAGATGTGCGTATAGTAGTTCAAGAGAAGCTTTCAGAGGTTGGTATGCCTAGGTTAGGGGAGAAAGGGGTTTCTGAGGATAATGTACTGTCAGAGTTGGGCTCCTCCGCTGATTTCATAAATTCTCTCCAATTTTTTATCAAAGATAAAATAGAATTAACCCGAGAAGCTTCCACCGAGGCTGATTCTGAAAATCTGAAAAAATTTATTGAGAGGATATCTGGGATCACTCGTAGACAACTACAGGTTTTTCTGGATATTTGTTTATCTCGTTATCGTTCAAAACAAATTGAGGCTGGAACTCCAATTGGTGCAATTGGAGCTCATAGTATTGGAGAGCCTGGGACCCAGATGACTTTAAAAACTTTTCACTTTGCTGGGGTTGCAAGCATGAATGTGACTCTTGGAGTTCCTCGCATCAAAGAAATTATAGATGGATCCTCAAAGATCAAAACACCAATCATCACTGCAATACTTGAGACTGATGACAGTGCAAAAACTGCAAGGATAGTAAAAGGTCGCATTGAAAAAACTAGTTTAGGCCAGGTTGCAAAGAGTATTAAAGTTGTTATGACTTCGAGGTTGGCATCAATTGTCATCACGCTTGACATGGAAAGAATCCAAGATGCACATCTCCATATAGATGCTAATATTGTAAAAGAATCAATTTTGCAAACTCGAAAACTAAAATTGAAGCAAGAGCACCTTAAGGTTTTGGATATCAAAAAACTTGAAGTTGTCCCACCAGATGCTGATAGAAGTAAAATCCAATTTCAACTCCATTATCTCAAAAATTTGCTTCCGTCAGTTGTTGTAAAGGGAATTAAATCTGCTGAACGTGTTGTTATCAGTAAAGAAGAAGATAAAGAGGCAAAGGCTGATAAGTTCAAATTACTGGTGGAAGGCACGGGCCTTCTAGAGGTTATGGGAATTGAAGGGGTTGACGGACGTAAAACTGTAAGTAATCATATCGATGAAGTGCAAAATTCTCTGGGAATTGAAGCTGCTAGAAAGTGTATCATTGAGGAGATCAAGTTTACTATGGGAAGTCATGGAATGAGTATAGACGTACGCCATATGATGCTTTTAGCAGATGTGATGACTGTCAGGGGTAAAGTCCTTGGTATAACAAGATTTGGAATTCAAAAGATGGGCAAAAGTGTGTTAATGCTTGCATCCTTTGAAAAGACATCAGATCATCTTTTCAATGCTTCCGTACATGGGACGGATGACCGGATTGAAGGAGTAAGTGAATGCATAATCATGGGTATACCAATTCAGATAGGCACTGGAATGATCAAGGTCAAACAAAGGTTGGATCCTCCGGAACTGCCCCAAGGAACCGCTCCTATTCTATCTTGA 4197 0.4077 MDKAKPKRVTFTKEPYIEDAGPRRIKSMKFGTLSESEISKIAEVQVYRAAYYTEDKKPVDGGLLDPRMGPANRESLPCMTCDAKFLDCPGHYGYLNLALPVFNVGYLSKIVEILKSICKGCARILLNEEKRKEHLKKMRNPKIEALTKIDIAKKVVELCSKVAKCPRCGYLNGSVKKVVSTLKIIHDRSKCSDSSVEEFQSALSHTRESRVTSNMDTHILNPFLALSLFKRMPDEDCELLYLDERPEKLIMTNVAVPPLAIRPSVIMDGSQSHENDLTERIKQIIQANAVVCQELQESSGSFRSLDGWEMLQFEVAQFINSDVRGIPFSMQRDKSLAGLIQRLKGKQGRFRGNLSGKRVEFTGRTVISPDPNLKISEVAIPIHMARILTYPERVSHHNIEKLRQCVRNGPDKYPGAKMIRHAGGHSRSLQIPARKRIADELKFGDIIERHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNIHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRSTFSLICSYMGDGMDDVDLPTPAIIKPVELWSGKQLFSVLLRPHANVRVYLNLTVKEKIYSTKLDDRKRELKTMCPNDGFVYFRNSELISGQLGKVTLGNGNKDGLFSVLLRDYKAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPKEILIKKKDATISDGYKKCDGFIEAFNKGKLELKAGCDAAQTLETLITGVLNGIRDTAGKVCMQTLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKTPGAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKCLEDLFLHYDYTVRNAGGGIVQFCYGDDGMDPAGMEGKDGKPLNFERLFLRSKAICPGDGDDDILSSSDVRIVVQEKLSEVGMPRLGEKGVSEDNVLSELGSSADFINSLQFFIKDKIELTREASTEADSENLKKFIERISGITRRQLQVFLDICLSRYRSKQIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIDGSSKIKTPIITAILETDDSAKTARIVKGRIEKTSLGQVAKSIKVVMTSRLASIVITLDMERIQDAHLHIDANIVKESILQTRKLKLKQEHLKVLDIKKLEVVPPDADRSKIQFQLHYLKNLLPSVVVKGIKSAERVVISKEEDKEAKADKFKLLVEGTGLLEVMGIEGVDGRKTVSNHIDEVQNSLGIEAARKCIIEEIKFTMGSHGMSIDVRHMMLLADVMTVRGKVLGITRFGIQKMGKSVLMLASFEKTSDHLFNASVHGTDDRIEGVSECIIMGIPIQIGTGMIKVKQRLDPPELPQGTAPILS* 1399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2863 1398 Gene3D RNA polymerase ii 389 449 - -
Dod03g2863 1398 PANTHER DNA-DIRECTED RNA POLYMERASE 7 1385 IPR045867 GO:0003899|GO:0006351
Dod03g2863 1398 Gene3D - 347 529 - -
Dod03g2863 1398 Pfam RNA polymerase Rpb1, domain 3 525 704 IPR007066 GO:0003677|GO:0003899|GO:0006351
Dod03g2863 1398 Gene3D - 822 880 - -
Dod03g2863 1398 Gene3D RNA polymerase Rpb1, domain 3 530 703 IPR042102 -
Dod03g2863 1398 Gene3D - 704 821 IPR038120 -
Dod03g2863 1398 CDD RNAP_III_RPC1_N 33 892 IPR035697 -
Dod03g2863 1398 Pfam RNA polymerase Rpb1, domain 4 730 835 IPR007083 GO:0003677|GO:0003899|GO:0006351
Dod03g2863 1398 Pfam RNA polymerase Rpb1, domain 2 356 522 IPR000722 GO:0003677|GO:0003899|GO:0006351
Dod03g2863 1398 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT 7 1385 - -
Dod03g2863 1398 SMART rpolaneu7 247 550 IPR006592 GO:0003677|GO:0003899|GO:0006351
Dod03g2863 1398 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 17 1383 - -
Dod03g2863 1398 Pfam RNA polymerase Rpb1, domain 5 842 1332 IPR007081 GO:0003677|GO:0003899|GO:0006351
Dod03g2863 1398 Gene3D RNA polymerase II, clamp domain 15 144 IPR044893 -
Dod03g2863 1398 CDD RNAP_III_Rpc1_C 1036 1378 IPR035698 -
Dod03g2863 1398 Gene3D - 1330 1385 - -
Dod03g2863 1398 Pfam RNA polymerase Rpb1, domain 1 23 354 IPR007080 GO:0003677|GO:0003899|GO:0006351
Dod03g2863 1398 Gene3D - 882 932 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2863 Dod-Chr3 60665892 60699019 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2863 K03018 - gmx:100811292 2236.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2863 03 60665892 60699019 Dod03g2863 03 60665892 60699019 ECH