Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2850 ATGAGTGACGAAGGAGAAAGGACTTGTCCTCTCTGTGCAGAAGAGATGGATTTGACAGATCAGCAGTTGAAACCTTGCAAATGTGGCTATGAGATTTGTGTCTGGTGTTGGCACCACATCATGGACATGGCCGAGAAGGATGACACAGAAGGGCGATGCCCGGCCTGTCGTTCTCCATATGATAAGGAAAAGATTGTTGGGATGGCTGCAAACTGTGAGAGATTGGTGAATGAAATTAATATGGAGAAGAAGATGAAGAATCAAAAAGCGAAGTCTAAATCATCTGATGGACGGAAGCAACTCAGCAGTGTGCGAGTGATTCAGAGGAACCTTGTATATATTGTTGGGTTGCCTATAAACTTTGCAGATGAAGATCTTCTTCAGAGGCGAGAGTATTTTGGTCAGTATGGGAAGGTTTTAAAAGTGTCGATGTCTCGGACAGCAGCTGGTGTCATTCAGCAGTTTCCGAATGATACATGCAGTGTGTTTTATTTCAGATATATTACTTATTCAAGGGAAGAAGAAGCTATTCGTTGTATTCAAAATGTACATGGATTTGTTTTGGATGGCAGACCTTTAAGGGCTTGTTTTGGAACCACAAAATATTGTCATGCATGGCTCCGAAATGCGCCTTGCAGCAATCCTGATTGTCTTTATCTGCATGAGGTTGGCTCTCATGAAGATAGTTTTACAAAAGATGAAATAATTTCAGCATACACTAGAAGTCGAGTTCAGCAAATCACTGGGGCTACAAACAACATGCAACGGAGGTCAGGGAATGTATTACCTCCTCCAGTAGATGATGGCATGAGCAATTCTTCAGCAAAGCCCATTGCGAAAAATGCTTCAAGTAACTCTGTTAGCACTGTAAGAGGTTCACCTCCTAATGGAATCTATGGGAGACCTGTAGCCCTTCCCGCTAGTGCCGCATGGGGGACCCAGGCTACAAATTGTCCGCCCTCTTCTGGAAGCCTATTGTATCCAGATGGGCCATCCAAGCCAAAACCTGATACAGTCAGCAGCACATTAGCTTTTTCTGCAGCTGTTGCTGGCACAACTCAGGCTTCCACATTGCATTGTGATTTGACAAAGAGGCCACCATCAAGTGATGGGAGTGATAGTATGATGCCAAGAGTGAAAAATGGTCTGTTGATACCTGTTAAACAAAACAATAGTATGGACATTCTGGCTAGTGCAGGTGATAAAACTTCGGCTTCTGATGTTTCTCCTGTGCATATGAAATTGAACAGCCAGTTGTCATCTGTGCCATTTTCTGGAGATAGTGATAGAGGCAGTTCTACTCCAGTAACCACAACAAATTCTACTGACATCCTTGGACAATCATGCAGCTCTGGTCCTGAGGAAGCAATCACTGCTACCAATGAAGAGATCCAGAATTTGTCCTGTGAATTATCCTCAATTAACATTGATAGAAAGACTGCAAATGAACCGTACAGCATAACCAAACCTAGTAGCCCGCCTACTGATTATGTCTTGATTAAATCTCCTCAAATTCAAGGATCACAGCATAATGTTGAAGGATTTAGAGATATAGTAGCTACAAATGAGACTGGTAATGTTGCTCCATCAGATAATGGGCTTTGTAGTTCTAAGGAACAGTGTGATTGGAGATTGGATTCTCAATCTCAAGTAGTGACTGGTGCTACTGAAGTGGAGGATGATGTAGCATCTTTTGATAACCAAAGACTGAATGATCCAGAAGTTGTTTGTCGGTCTTATTTGCCAAAGTCAACGAGTTTTCTTCATGGATCAAACCATTCTAGCCCTCATCTTCTGCAGCACAGTGAACCCTATACTGCTGTAAATGCTGGTTCTGTATCTGCCAATGATAGAGATGGAAATGAATCTCTATTACATTCGTCAAGCATTCTATGTAATGGCTACCCTGAGAAATTGGTTGGCAGTAGCTCTTATGGTTTGCTTCATGATGAAAGGAACAGGCAAAGCATTGGAAGATTAGTTAGTGAAGCAGTTAGTGCAGGACGGGATGCTGCTGTGGTTAAGGGTGAGAATAATATAATTTCAAATATATTGTCCATGGACCTTGACCCGTGGGATGACTCAATGACATCACCGCATAATTTAGCTAAGTTGTTGGGCAACAACAACAATAATCAACCTGGTCCAATACAAAAATCTAGTTCTCGGAAAGTTCAAAGTAACAATCAGTCTAGATTCTCTTTTGCAAGGCAGGAGGAATCCAGAATCCAATCCCTTGATGTGCATCCATCTTATGGTGTGAGGCAGCAACAGGCAAGGAACCACCCACTCGTCCAGGATTTTGCTGACAGAGACTTTTATATGGATAAGTTGGGCATTGCAAATGGCTTTTCTACAAGTAACTTTGAGGATACTGAAAATATAGGCAGTAGCCAATTTGTTGCTTCAAATAAGCTTTCTGCTATTTCAAGAGCACAAGTATCAGCCCCGCCAGGATTTTCAGTTCCAAGCAGGCCACCACCACCTGGTTTTTCTTCTCATGAGAGAGTGGAGCAGGCTTTTGACTCTATATCTGGGAATTCATTGCTTGACCATTCTTCCTTTTTGAGAAATTCATATCAGACACCCCCAGCTGGAAATATTGGCAGTGCAGGGGACATTGAATTTATGGACCCTGCTATTTTGGCTGTTGGTAAGGGGAGACTCCAAGGTGCACTAAACAGCCCAGCACTGGACATGCGCTCAAATCTCATGCCACAATTAAATTACTTTGATAATGAGGCCAGACTTCAATTATTGATGCAAAGATCTCTCTCACCGCAGCAAAACCTCAGATTTCCAGATATTGGGAATACTTATTCTCAGCTTGGTGATTCCTTTGGCATTTCTTCGAGGTTAGATCAACCACAAATCGGTAATATAGCCCCATTCCCTCAGCTGTCTATGCAGCAGTCTACAAATGCAGGCTTGTCAAATGGCCAATGGGATGGGTGGAATGAGATGCAGAGTGGGAACAATTTGGGGGTGGCCGAGCTTTTGAGAAATGAAAGACTTGGATTTAACAAGTTTTACTCAGGATATGATGATTCTAAATATCGGATGCCAAACTCTGGGGATCTTTACAATAGAACATTTGGGATGTGA 3105 0.4251 MSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRSPYDKEKIVGMAANCERLVNEINMEKKMKNQKAKSKSSDGRKQLSSVRVIQRNLVYIVGLPINFADEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNDTCSVFYFRYITYSREEEAIRCIQNVHGFVLDGRPLRACFGTTKYCHAWLRNAPCSNPDCLYLHEVGSHEDSFTKDEIISAYTRSRVQQITGATNNMQRRSGNVLPPPVDDGMSNSSAKPIAKNASSNSVSTVRGSPPNGIYGRPVALPASAAWGTQATNCPPSSGSLLYPDGPSKPKPDTVSSTLAFSAAVAGTTQASTLHCDLTKRPPSSDGSDSMMPRVKNGLLIPVKQNNSMDILASAGDKTSASDVSPVHMKLNSQLSSVPFSGDSDRGSSTPVTTTNSTDILGQSCSSGPEEAITATNEEIQNLSCELSSINIDRKTANEPYSITKPSSPPTDYVLIKSPQIQGSQHNVEGFRDIVATNETGNVAPSDNGLCSSKEQCDWRLDSQSQVVTGATEVEDDVASFDNQRLNDPEVVCRSYLPKSTSFLHGSNHSSPHLLQHSEPYTAVNAGSVSANDRDGNESLLHSSSILCNGYPEKLVGSSSYGLLHDERNRQSIGRLVSEAVSAGRDAAVVKGENNIISNILSMDLDPWDDSMTSPHNLAKLLGNNNNNQPGPIQKSSSRKVQSNNQSRFSFARQEESRIQSLDVHPSYGVRQQQARNHPLVQDFADRDFYMDKLGIANGFSTSNFEDTENIGSSQFVASNKLSAISRAQVSAPPGFSVPSRPPPPGFSSHERVEQAFDSISGNSLLDHSSFLRNSYQTPPAGNIGSAGDIEFMDPAILAVGKGRLQGALNSPALDMRSNLMPQLNYFDNEARLQLLMQRSLSPQQNLRFPDIGNTYSQLGDSFGISSRLDQPQIGNIAPFPQLSMQQSTNAGLSNGQWDGWNEMQSGNNLGVAELLRNERLGFNKFYSGYDDSKYRMPNSGDLYNRTFGM* 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2850 1034 MobiDBLite consensus disorder prediction 274 293 - -
Dod03g2850 1034 MobiDBLite consensus disorder prediction 266 295 - -
Dod03g2850 1034 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 200 IPR000504 GO:0003723
Dod03g2850 1034 MobiDBLite consensus disorder prediction 419 453 - -
Dod03g2850 1034 SUPERFAMILY RING/U-box 3 66 - -
Dod03g2850 1034 SUPERFAMILY RNA-binding domain, RBD 104 194 IPR035979 GO:0003676
Dod03g2850 1034 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 1 1034 IPR039780 GO:0004842|GO:0030014
Dod03g2850 1034 CDD RRM_CNOT4 105 208 IPR034261 -
Dod03g2850 1034 CDD mRING-HC-C4C4_CNOT4 9 58 IPR039515 -
Dod03g2850 1034 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 1034 - -
Dod03g2850 1034 Gene3D - 111 196 IPR012677 -
Dod03g2850 1034 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 77 IPR013083 -
Dod03g2850 1034 MobiDBLite consensus disorder prediction 358 378 - -
Dod03g2850 1034 SMART rrm2_1 111 196 IPR003954 GO:0003676
Dod03g2850 1034 ProSiteProfiles Zinc finger RING-type profile. 9 57 IPR001841 -
Dod03g2850 1034 Pfam RING/Ubox like zinc-binding domain 9 61 - -
Dod03g2850 1034 MobiDBLite consensus disorder prediction 700 744 - -
Dod03g2850 1034 MobiDBLite consensus disorder prediction 701 741 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2850 Dod-Chr3 60423939 60431850 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2850 K10643 - gmx:100801880 1590.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2850 03 60423939 60431850 Dod03g2850 03 60423939 60431850 ECH
Dod03g2850 03 60423939 60431850 Dod10g1657 10 37586737 37596437 PCT