Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2826 ATGCAATCTTTAGGTAGAAATTACCTGAAATATCGTAGATGCTTGAGTAGGAATAGCTCGAACGAAAATCTATCCTCCTTCAAAAACTCATTTTGGCAGAAAATTCCTGAACCATCCATGCTTAATGACCCCATTTGTCGAAACTCACATAAGATTCGTTTTTTCCATCATACCCAGAAATTTAATCCTTTTTTGTTCCAAATCACTGCTACCCACAATCAATTCCCTGTAATAGTAGCACCCATTTGCTTCAATTCTCATTATTATTATTATTCAACTAGGGCTCCCTCAAGGTCTTATAGAAAGAGGGTTCGTAAGAGGTTGTTGAAATCCCTCAAGCGTACGTTAGACCAAGCCAAATTTGAGTTGGCACTGTCCAAACTACCCCCCAGGTTCAACCCTGAAGAACTATGCAATTTGATCACTCTCCAAGATGACCCTTTGGTTTGTTTGGAGCTGTTTCATTGGGCATCTCACCAGCCAAGGTTCCGGCATGACGAGTCCACTTATCATGTCACCATAAAGAAGCTTGGTTCTGCAAAGATGTACCAAGAAATGGATGACATTGTGAACCAAGTGCTCGCAGTTCCTTTGATCGGTTCAGAGGCTTTGTACAACATGATTATATATTATTTCACTGAGGCCAGGAAGCTGACTAGAGCTGTGAATATATTTAAGCACATGCAGGGTGGTAGGAATTTGAATTGCAAGCCCTCTATTAGAACCTATAATATTCTGTTTGCTGCACTTTTGAGTAGAGGTAGCAACACCTATATAAACCATGTGTATATGGACACGATTAGGTGTCTGTTCAGGCAAATGGTCAATGATGGTGTAGAACCGGACATATTGTCATTAAATGCTATGGTAAAAGGTTATGTGCTTTCTCTCCATGTTAACGATGCACTGAGGATATTCCATCAAATGGGTGTGGTTTTTCATTGCCTGCCCAACTCTTTTACCTATGATTACTTGATTCATGGGTTGTGTGCGCAAGGCAGAACGAATAACGCCAAAGAATTATGTCATGAAATGAAGACCAAGGGCTTCATCCCAAGTAGTAAAGCTTATAATTCGCTTGTCAATGCTTTGGCACTTGAAGGAGAGGTTGACGAGGCAGTAAATTTTCTGTGGGAGATGACTGAAAAGCAGAGGTCTGCTGATTTTATTACATATAGGACTGTACTTGATGAGATTTGTAGACGGGGACGAGTTCAGGAGGCCATGAGGTTATTGCGTGAGTTTCAAGATAAGGACCTCATAGATGGGCATGCTTACAGGAAGCTTCTTTATGTGCTTGAAGATGACTATGGGAATTCAGTGAGCAGAATTGATTCAGGTCCAGCCTCAACCTCACCTGGAAACTCTTTGTAA 1374 0.4105 MQSLGRNYLKYRRCLSRNSSNENLSSFKNSFWQKIPEPSMLNDPICRNSHKIRFFHHTQKFNPFLFQITATHNQFPVIVAPICFNSHYYYYSTRAPSRSYRKRVRKRLLKSLKRTLDQAKFELALSKLPPRFNPEELCNLITLQDDPLVCLELFHWASHQPRFRHDESTYHVTIKKLGSAKMYQEMDDIVNQVLAVPLIGSEALYNMIIYYFTEARKLTRAVNIFKHMQGGRNLNCKPSIRTYNILFAALLSRGSNTYINHVYMDTIRCLFRQMVNDGVEPDILSLNAMVKGYVLSLHVNDALRIFHQMGVVFHCLPNSFTYDYLIHGLCAQGRTNNAKELCHEMKTKGFIPSSKAYNSLVNALALEGEVDEAVNFLWEMTEKQRSADFITYRTVLDEICRRGRVQEAMRLLREFQDKDLIDGHAYRKLLYVLEDDYGNSVSRIDSGPASTSPGNSL* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2826 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Dod03g2826 457 Pfam Pentatricopeptide repeat domain 205 248 IPR002885 -
Dod03g2826 457 PANTHER ATPASE EXPRESSION PROTEIN 3 69 444 - -
Dod03g2826 457 Gene3D Tetratricopeptide repeat domain 91 258 IPR011990 GO:0005515
Dod03g2826 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
Dod03g2826 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Dod03g2826 457 Pfam PPR repeat 387 414 IPR002885 -
Dod03g2826 457 Gene3D Tetratricopeptide repeat domain 259 439 IPR011990 GO:0005515
Dod03g2826 457 Pfam PPR repeat 285 309 IPR002885 -
Dod03g2826 457 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN 69 444 - -
Dod03g2826 457 Pfam PPR repeat family 317 365 IPR002885 -
Dod03g2826 457 TIGRFAM PPR: pentatricopeptide repeat domain 320 353 IPR002885 -
Dod03g2826 457 TIGRFAM PPR: pentatricopeptide repeat domain 390 419 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2826 Dod-Chr3 60136764 60139451 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2826 169 422 Glycosyltransferase AT1G05670 21.154 8.71e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2826 - - gmx:102666460 644.81