Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2758 ATGGCCTCAGCCAACGCACTCTCCTCCGCTTCCATTCTCCGCTCCGCCAACCGCCACCAGAGTTTGAGCAGCAGGAGGCTGAACCAGCAGCAGAGTGGGAGAGTGAATTACCGTCAACCGGCTAATCCTCGCTTCTCAGTTAAAGCCTCCGCCAAGGAGATTGCCTTCGACCAGAGCTCACGCGCCGCCATTCAAGCCGGCATCGACAAGCTTGCCGATGCCGTCGGTCTCACCCTTGGCCCTAGGGGGAGGAACGTTGTGTTGGATGAGTTTGGAAACCCTAGAGTTGTTAACGATGGGGTCACCATTGCCAGGGCTATTGAACTGCCTGATGCCATGGAGAATGCTGGCGCTGCCCTCATTAGGGAGGTTGCAAGTAAGACTAATGACTCTGCTGGTGATGGGACTACAACCGCATCGGTTCTTGCTCGTGAGATAATCAAACTCGGACTTCTCAGTGTGACATCTGGTGCTAACCCTGTGTCTATCAAGAGAGGGATTGATAAAACTGTGCAGGGATTGATAGAGGAGCTCGAGAAGAAGGCCAGGGCTGTCAAAGGAGGAGATGATATCAAAGCCGTTGCTTCCATTTCTGCTGGAAATGACGAGTTGATTGGGAAAATGATCGCGGAGGCAATTGACAAGGTTGGGCCAGATGGTGTTTTGTCCATTGAGTCGTCATCCTCATTTGAGACTACCGTTGAAGTTGAAGAGGGAATGGAGATTGACAGAGGCTACATCTCTCCTCAATTTGTTACCAACCCTGAGAAGTCAATTGTTGAATTCGAGAACGCAAGAGTCTTGATTACAGATCAGAAGATTTCGGCAATTAAGGATATAATTCCTCTGTTGGAGAAAACCACACAGTTGAGAGCCCCCTTGCTTATCATTGCTGAAGATGTCACCGGTGAGGCTTTGGCTACCCTTGTTGTCAATAAGCTGCGGGGTATTCTTAATGTTGCTGCCATCAAAGCTCCTGGCTTCGGTGAGCGGAGAAAGGCCCTCCTTCAAGACATTGCTATATTGACAGGTGCTGAGTACCAAGCCAGTGATCTTGGCCTACTCGTTGAGAACACCTCAGTTGAGCAGCTTGGTTTGGCTCGTAAAGTGACCATCTCCAAGGATTCTACCACTATCATTGCTGATGCTGCATCAAAGGATGAGTTGCAAGCCAGGGTTGCACAGTTGAAGAAGGAGTTGGCAGAGACGGACTCAATTTATGATTCGGAGAAACTGGCAGAGAGGATTGCTAAATTGTCTGGTGGAGTTGCAGTGGTCAAGGTGGGTGCTGCCACAGAAACTGAACTTGAGGATCGTAAGCTCCGAATTGAGGATGCCAAGAATGCAACTTTTGCTGCCATTGAGGAAGGTATTGTTCCTGGTGGAGGTACTGCATTGGTTCATCTCTCTGCTCATGTCCCTGCAATCAAGGACAAGCTTGAAGACGCAGATGAGAGGTTAGGAGCCGATATTGTGCAAAAGGCATTGGTAGCACCTGCATCATTGATTGCTCAAAATGCCGGTATAGAAGGTGAAGTTGTTGTGGAGAAAATAAAGAACAGTGAATGGGAGGTTGGTTACAATGCCATGACAGACGAGTATGAGAATTTAGTGGAGGCTGGAGTCATTGACCCTGCAAAGGTGACAAGGTGTGCTTTGCAGAATGCTGCTTCAGTTGCTGGAATGGTCTTGACCACACAGGCCATTGTGGTTGAAAAGCCTAAGCCCAAGGCACCTGCTGCTGCTGCCCCACAAGGCCTTACTATTTGA 1770 0.4932 MASANALSSASILRSANRHQSLSSRRLNQQQSGRVNYRQPANPRFSVKASAKEIAFDQSSRAAIQAGIDKLADAVGLTLGPRGRNVVLDEFGNPRVVNDGVTIARAIELPDAMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSIKRGIDKTVQGLIEELEKKARAVKGGDDIKAVASISAGNDELIGKMIAEAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKSIVEFENARVLITDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAILTGAEYQASDLGLLVENTSVEQLGLARKVTISKDSTTIIADAASKDELQARVAQLKKELAETDSIYDSEKLAERIAKLSGGVAVVKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSAHVPAIKDKLEDADERLGADIVQKALVAPASLIAQNAGIEGEVVVEKIKNSEWEVGYNAMTDEYENLVEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKAPAAAAPQGLTI* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2758 589 SUPERFAMILY GroEL equatorial domain-like 55 570 IPR027413 -
Dod03g2758 589 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 1 587 - -
Dod03g2758 589 SUPERFAMILY GroEL apical domain-like 231 423 IPR027409 -
Dod03g2758 589 Pfam TCP-1/cpn60 chaperonin family 71 574 IPR002423 GO:0005524
Dod03g2758 589 ProSitePatterns Chaperonins cpn60 signature. 452 463 IPR018370 GO:0005524|GO:0006457
Dod03g2758 589 Coils Coil 386 406 - -
Dod03g2758 589 MobiDBLite consensus disorder prediction 17 39 - -
Dod03g2758 589 TIGRFAM GroEL: chaperonin GroL 51 575 IPR001844 GO:0042026|GO:0140662
Dod03g2758 589 CDD GroEL 52 572 IPR001844 GO:0042026|GO:0140662
Dod03g2758 589 PANTHER BNAA04G16190D PROTEIN 1 587 - -
Dod03g2758 589 Hamap Chaperonin GroEL [groEL]. 50 587 IPR001844 GO:0042026|GO:0140662
Dod03g2758 589 PRINTS 60kDa chaperonin signature 397 422 IPR001844 GO:0042026|GO:0140662
Dod03g2758 589 PRINTS 60kDa chaperonin signature 130 157 IPR001844 GO:0042026|GO:0140662
Dod03g2758 589 PRINTS 60kDa chaperonin signature 75 101 IPR001844 GO:0042026|GO:0140662
Dod03g2758 589 PRINTS 60kDa chaperonin signature 445 466 IPR001844 GO:0042026|GO:0140662
Dod03g2758 589 PRINTS 60kDa chaperonin signature 315 338 IPR001844 GO:0042026|GO:0140662
Dod03g2758 589 MobiDBLite consensus disorder prediction 17 42 - -
Dod03g2758 589 SUPERFAMILY GroEL-intermediate domain like 185 249 IPR027410 -
Dod03g2758 589 Gene3D - 54 571 IPR027413 -
Dod03g2758 589 Gene3D GroEL 239 420 IPR027409 -
Dod03g2758 589 Gene3D - 184 457 IPR027410 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2758 Dod-Chr3 59312403 59317192 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2758 - - gmx:100806471 969.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2758 03 59312403 59317192 Dod03g2758 03 59312403 59317192 ECH