LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod03g2720	ATGCAAGCAACCATGGTGGCACCCCAAGCTCTTCTCTCTCGCTTCCCAAACCCAAACCCACTCCTCAGATCCTCCTTCTCTGGCATCTCCCTCAATCGCATTAAGCTCTCTTCCCACCACTTAACCCTCTCATCCTCAGCCTCCAGGCCCCTCACCATCGTCGCCGCCACCAAGAAAGCTGTCGCCGTCCTCAAGGGCAACTCCGCCGTCGAAGGTGTCGTCACTCTCTCCCAGGAAGACGACGGCCCTACTACAGTTAATGTTCGTGTTACTGGCCTTACTCCAGGTCTTCATGGTTTTCACCTTCATGAGTATGGTGATACCACAAATGGGTGTATATCGACGGGAGCACATTTTAATCCTAATAACTTGACACATGGTGCTCCTGAGGATGAAATCCGTCATGCGGGTGACCTGGGAAACATAGTTGCTAATGCCAATGGGGTTGCAGAGGCAACAATCGTGGATAATCAGATACCACTCAGTGGCCCCAATTCAGTTGTTGGAAGGGCCTTCGTGGTTCATGAACTTGAGGATGACCTTGGAAAGGGTGGGCATGAACTTAGTTTGACCACTGGAAATGCTGGTGGAAGATTAGCATGTGGTATGAAGAAAAATATGAATTGA	627	0.5024	MQATMVAPQALLSRFPNPNPLLRSSFSGISLNRIKLSSHHLTLSSSASRPLTIVAATKKAVAVLKGNSAVEGVVTLSQEDDGPTTVNVRVTGLTPGLHGFHLHEYGDTTNGCISTGAHFNPNNLTHGAPEDEIRHAGDLGNIVANANGVAEATIVDNQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGMKKNMN*	209

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod03g2720	208	Gene3D	Superoxide dismutase, copper/zinc binding domain	54	207	IPR036423	GO:0006801\|GO:0046872
	Dod03g2720	208	PRINTS	Cu-Zn-superoxide dismutase family signature	135	144	IPR001424	GO:0006801\|GO:0046872
	Dod03g2720	208	PRINTS	Cu-Zn-superoxide dismutase family signature	99	121	IPR001424	GO:0006801\|GO:0046872
	Dod03g2720	208	PRINTS	Cu-Zn-superoxide dismutase family signature	154	176	IPR001424	GO:0006801\|GO:0046872
	Dod03g2720	208	PRINTS	Cu-Zn-superoxide dismutase family signature	179	205	IPR001424	GO:0006801\|GO:0046872
	Dod03g2720	208	CDD	Cu-Zn_Superoxide_Dismutase	58	201	IPR001424	GO:0006801\|GO:0046872
	Dod03g2720	208	PANTHER	SUPEROXIDE DISMUTASE CU-ZN -RELATED	55	203	IPR024134	-
	Dod03g2720	208	PANTHER	SUPEROXIDE DISMUTASE [CU-ZN]	55	203	-	-
	Dod03g2720	208	Pfam	Copper/zinc superoxide dismutase (SODC)	70	202	IPR001424	GO:0006801\|GO:0046872
	Dod03g2720	208	ProSitePatterns	Copper/Zinc superoxide dismutase signature 1.	99	109	IPR018152	-
	Dod03g2720	208	SUPERFAMILY	Cu,Zn superoxide dismutase-like	59	204	IPR036423	GO:0006801\|GO:0046872

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod03g2720	Dod-Chr3	58833557	58836197	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod03g2720	K04565		-	gmx:100815376	312.768

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod03g2720	03	58833557	58836197	Dod03g2720	03	58833557	58836197	ECH