Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2703 ATGGCTCCGATTCCAACGGAGAATGGCGTCAATGGAGACGACGAGAGAGAAGAACAAGAACAAGAAGACGAAGAGGAAGAAGAGGAAGAGCCAAGGCTCAAGTACCAGAGAATGGGAGGGAGCATACCTTCGCTTCTTGCCACCGACGCGGCGTCGTGCGTCGCCGTCGCGGATCGGATGATCGCACTCGGCACACATGGCGGCGCCGTTCACATCCTCGATTTTCTCGGCAATCAGGTGACGGAATTCACTGCCCATGCTTCTGTTGTCAACGACCTTTGCTTTGACATACAAGGGGAATATATTGGAAGCTGTTCTGATGATGGATCGGTAGCTATAAACAGCCTTTTCACCGATGAGAAAATGAAATTTGAGTACCAACGCCCGATGAAGGGTATTGCGTTGGACCCAGATTATGCAAGGAATGCGTCTAGGAGATTTGTTGCTGGTGGTTTAGCAGGTCATTTGTATTTAAATTCAAAGAAATGGTTGGGCTATCGTGACCAGGTTTTGCACTCTGGCGAAGGTCCAATACATGCTGTGACGTGGAGAACAAGTCTTGTTGCTTGGGCAAATGATGCAGGGGTGAAGGTTTATGATACTGCCAATGACCAGCGTATAACATTTATTGAAAGACCACGTGGGAGCCCACACCCTGAGCTTCTGCGTCCTCACCTGGTTTGGCAGGATGACACCCTCTTGGTTATTGGCTGGGGAACATCTGTCAGAATTGCTTCTCTAAGGACAAGTCACCATAAAGCAGCCAATGGGACATACAGGCAAGTTCCTTTGTCTGGTAGGACGCAAGTGGATATTGTTGCATCTTTTCAGACTGGCTATTTCATCTCAGGGATTGCCCCCTTTGGTGATGCTTTGGTAGTTTTAGCTTATATTCCTGGAGAAGAAGATGAAGATAAGGATTTTAGTAGCACTGCTCCTTCCCGGCTGGGAAATGCACAAACACCAGAAGTAAGATTAGTAACATGGAATAATGAAGAACACTCAACTGATGCTCTACCAGTACATGGGTTTGAGCATTACAAGGCAAAGGACTATTCTCTTGCTCATGCTCCTTTCTCAGGTAGCAGCTATGCTGGTGGTCAGTGGGCTGCAGGTGATGAGCCACTTTACTATATTGTATCCCCAAAAGACGTAGTTATTGCAAAGCCGAGGGATACAGAAGATCATATTGCTTGGCTTCTTCAACATGGCTGGCATGAAAAAGCTTTGGCTGCAGTTGAATCTGGTCAGGGACGGAGTGAACTACTTGATGAGGTGGGATCTAGGTACCTAGATCATCTGATTGTGGAAAGAAAATATGGTGAAGCAGCTTCTCTGTGTACCAAGTTGTTGCGAGGGTCAGCGTCAGCATGGGAGAGATGGGTTTTTCACTTTGCTCACCTTCGTCAACTCCCTGTTTTGGTTCCATACATGCCCATAGAAAACCCCAGACTTCGTGATACTGCTTATGAGGTTGCTCTTGTGGCGTTGGCTACAAATCCATCTTATCATAAGGATCTCTTGTCCACTGTTAAATCATGGCCATCTGTCATTTATTCTGCATTACCTGTGATTTCAGCCATTGAACCTCAGCTCAGTACTTCGTCCATGACTGATTCGCTCAAGGAGGCATTAGCAGAGTTGTATGTTATCGATGGGCAATATGAAAAAGCCTTGTCATTATATGCTGATCTTATGAAGCCAGAAGTATTTGATTTCATCGACAAATACAACCTAAATGAAACAATTCGTGAAAAGGTTGTCCAACTGATGATGATAGATTGCAAACAAGCAGTTCCTCTGTTAATCCAGAATAGGGACTTGATAAGTCCACCTGAAGTTGTGAAGCAGCTTCTTAATGCCTATGACAAGTGTGACTGCAGATATTTTTTACATTTATATCTCCATTCACTCTTTGAAGTAAATCCACATACTGGGAAAGACATTCACGATATGCAGGTAGAACTCTATGCGGATTATGATCCAAAGATGCTGCTATCTTTCCTTCGTAGCAGTCAGCACTATACTATTGAGAAGGCCTATGAAATTTGCATTAAAAGAGACCTAATGAAGGAGCAAGCCTTCATCTTAGGAAGGATGGGAAACTCAAAGCAAGCCCTAGCTGTTATTATAAATAAATTAGGGGACATAGCAGAGAGTTTGTCACTATGCAGCATGATGATGAACTATGGGAAGGAACTAATCAAGCAATGCCTTGACAAACCTGAAATGGTAGGTATGCTGTTGGAGCACACAGTTGGAAATCTTGATCCCCTCTACATTGTAAATAAGGTTCCCAATGGGTTGGAAATACCTCAGCTCAGGGATCGGCTGGTTAAAATTATCACTGATTACAGGACTGAAACTTCACTAAGACATGGGTGCAATGATATCCTTAAGGCGGACTGTGTCAATCTTTTAATCAAGTACTACAAAGAGTCAAGGCACGGAATTTCTTTAGGTAACGAAGAAGATGAGCGACGAATTAAGAGTAGTGATACTCATGCTTCTCAAGCGTTTGAGAAATCCCCTAATTTGAGAATTATGGAGGTGAAGTCAAAGACTAGGGGAGGTGGAAGATGTTGTATATGTTTTGACCCCTTCTCTGTACAGAATGTAGCCGTCATTGCTTTCTTTTGCTGCATGCTTATCACACAACTTGTCTCGCGGATTCGTCCTACACTAGTGATAGCAATAAAGAGGTTAAAGCCAATTCCCAAGAGGCAGAAACATATGATTACAATGGGTATATGGATGATGATAGCTATGATGATGATGATGAAAGCGAGTTTGGTGGTCCTCGAATGCGTTGTATATTGTGTACCACTGCTGCCAGTTGAATGTGTTAGTGCTGAGTTTTTACATTGTCCTGATGGCTTGCAGCTAATTCTCCTTCAAAATGAAGTTTTCCCATCTACTTGA 2922 0.4374 MAPIPTENGVNGDDEREEQEQEDEEEEEEEPRLKYQRMGGSIPSLLATDAASCVAVADRMIALGTHGGAVHILDFLGNQVTEFTAHASVVNDLCFDIQGEYIGSCSDDGSVAINSLFTDEKMKFEYQRPMKGIALDPDYARNASRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPIHAVTWRTSLVAWANDAGVKVYDTANDQRITFIERPRGSPHPELLRPHLVWQDDTLLVIGWGTSVRIASLRTSHHKAANGTYRQVPLSGRTQVDIVASFQTGYFISGIAPFGDALVVLAYIPGEEDEDKDFSSTAPSRLGNAQTPEVRLVTWNNEEHSTDALPVHGFEHYKAKDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDTEDHIAWLLQHGWHEKALAAVESGQGRSELLDEVGSRYLDHLIVERKYGEAASLCTKLLRGSASAWERWVFHFAHLRQLPVLVPYMPIENPRLRDTAYEVALVALATNPSYHKDLLSTVKSWPSVIYSALPVISAIEPQLSTSSMTDSLKEALAELYVIDGQYEKALSLYADLMKPEVFDFIDKYNLNETIREKVVQLMMIDCKQAVPLLIQNRDLISPPEVVKQLLNAYDKCDCRYFLHLYLHSLFEVNPHTGKDIHDMQVELYADYDPKMLLSFLRSSQHYTIEKAYEICIKRDLMKEQAFILGRMGNSKQALAVIINKLGDIAESLSLCSMMMNYGKELIKQCLDKPEMVGMLLEHTVGNLDPLYIVNKVPNGLEIPQLRDRLVKIITDYRTETSLRHGCNDILKADCVNLLIKYYKESRHGISLGNEEDERRIKSSDTHASQAFEKSPNLRIMEVKSKTRGGGRCCICFDPFSVQNVAVIAFFCCMLITQLVSRIRPTLVIAIKRLKPIPKRQKHMITMGIWMMIAMMMMMKASLVVLECVVYCVPLLPVECVSAEFLHCPDGLQLILLQNEVFPST* 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2703 973 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 41 HOMOLOG 2 889 - -
Dod03g2703 973 Gene3D - 5 275 IPR015943 GO:0005515
Dod03g2703 973 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 602 747 IPR000547 GO:0006886|GO:0016192
Dod03g2703 973 MobiDBLite consensus disorder prediction 1 36 - -
Dod03g2703 973 Pfam Region in Clathrin and VPS 605 720 IPR000547 GO:0006886|GO:0016192
Dod03g2703 973 SMART WD40_4 164 200 IPR001680 GO:0005515
Dod03g2703 973 SMART WD40_4 76 115 IPR001680 GO:0005515
Dod03g2703 973 PANTHER VACUOLAR PROTEIN SORTING VPS41 2 889 IPR045111 GO:0006623
Dod03g2703 973 Gene3D Tetratricopeptide repeat domain 541 805 IPR011990 GO:0005515
Dod03g2703 973 MobiDBLite consensus disorder prediction 13 29 - -
Dod03g2703 973 PIRSF Vps41 5 895 IPR016902 GO:0034058|GO:0046907
Dod03g2703 973 SUPERFAMILY WD40 repeat-like 48 250 IPR036322 GO:0005515
Dod03g2703 973 SMART CLH_2 602 747 IPR000547 GO:0006886|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2703 Dod-Chr3 58642155 58659587 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2703 K20184 - gmx:100804340 1545.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2703 03 58642155 58659587 Dod03g2703 03 58642155 58659587 ECH