LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod03g2663	ATGGCGGAGGATCAGAAAGCTCCGAAGCTTCTTCCGGTGGAAGGGAAGCGCAACATCCTCATCACCAGCGCCTTGCCTTACGTCAACAACGTCCCTCATCTCGGCAACATCATCGGATCTGTGTTGAGTGCTGATGTGTTTGCTCGGTATTGTCGCCTTCGCGGTTACAATGCTATCTACATGTGCGGTACTGACGAGTATGGCACTGCAACGGAGACTAAAGCTCTGGAAGAGAATTGCTCCCCTAAAGAGATTTGTGACAAATATCATGCTATTCATAAGGATATCTACAATTGGTTCAATATAAGTTTTGATGAATTTGGGAGGACGTCATCCCCACAGCAAACTGAAGTTTGCCAAGCAATTTTTAAAAAATTGTGGGAGAACAATTGGCTCTCAGAGAACACAATGCAGCAGCTTTACTGTGATACATGCAAAAAGTTCTTAGCTGATCGACTTGTGGAGGGTAACTGCCCAACTCCTGGGTGTGAGTATGATTCTGCTCGAGGAGATCAATGTGAAAAGTGTGGGAAGCTTCTAAATCCAACAGAATTAAAAGATCCCAGGTGCAAGGTTTGTCAAAATACTCCACGAATTCGCGATACCGACCACTTGTTTCTTGAACTCCCCCTGTTGAAGGAAAGGTTGGAAAAATACATTAATGAGATGTCAGTGGTAGGATTATGGAGTCAGAATGCTATCCAAACCACTTATTCATGGCTTAAAGAAGGATTAAAGCCACGTTGTATTACCAGGGATCTGAAGTGGGGGGTTCCTGTTCCACATGAAAAATACAGTGACAAGGTTTTCTATGTATGGTTCGATGCACCTATTGGGTATGTCTCAATCACTTCATGCTACACAACTGATTGGGAGAAATGGTGGAAAAACCCGGAGAATGTGGAGTTGTATCAGTTTATGGGCAAGGACAATGTGCCTTTCCACACTGTGATGTTTCCATCTACTCTACTTGGAACTGGTGAAAACTGGACTTTGATGAAGACTATTAGTGTTACTGAATACTTGAATTATGAAGCAGGGAAGTTTTCTAAAAGCAAAGGCATAGGAGTTTTTGGTAATGATGCAAAAGATACTAATATTCCAGTTGAAGTATGGAGATATTACTTGCTCACAAATCGGCCTGAGGTATCGGATACATTATTTTCATGGTCTGACTTGCAAGCAAAATTAAATAGTGAGCTGCTGAATAATTTGGGCAACTTCGTCAACCGAGTTTTGAGTTTTATTGCTAAACCTGCAGGTCAAGGATATGATTCCATTATTCCCGATGTTGCTGATGTAAGTAGTGACTCCCATGCTCCAACCAAAAAATTGGCTGAAAGAGTTTCTGCATATCTGGAGCAGTACATAGAAGCCATGGAGAAGGTTAAACTGAAGCAAGGGTTGAAAAGTGCAATGAGCATATCTAGTGAGGGGAATGGATATCTGCAGGAAAGTGAATTTTGGCGCCTTTACAAGGAAAACAAACCTCTTTGCTCCCTTGTTATGAAAACTGCAGTTGGGGTTGTATATATTCTTGCATGTTTATTGGAATCTTTTATGCCATCTTTCACTCTTGAGGTATTTAAGCAGCTAAATTTGTCTGCGGAGTTGCATCTATCACTTTGTGATGAAAAGGGAGACATTAATAAGGCAAAAAGACCTTGGGAGATCATAAATGCTGGCCATAAAATTGGGAAACCCCAGCCATTGTTCAAGGAACTGAAAGATGAAGAAGTGGAGTTCTTCAGGAAGAAATTTGCAGGAAGTCAAGCTGATAGGATTTTGCGTGCAGAGGCTGAAGCTGAAGCTGGAAAGGTTGCTGAGCAACTGAAGAAAACAAAAGTCTCAGATGGCAATGGAAAGAAAAAAGCATCAGCTAAGTCATCAAATGAACCCAAAACCAAGGCTGCTTCTGAATCCGAGATTACCATCACAAGGCTTGATATTCGGGTTGGCCTCATTAAAAAAGCTCAAAAACATCCTGATGCTGATTCACTGTATGTAGAAGAGATTGATGTTGGCGAAGAACAGCCCAGAACAGTTGTCAGTGGGCTTGTCAAGTATATACCACTTGATGAGATGCAGAACCGGAAGGTCTGTGTTCTCTGCAACCTGAAGCCAGCAACCATGAGGGGCATTAAATCCCAAGCAATGGTTCTTGCTGCTTCCAATAATGATCACACCAAGGTTGAGTTGGTCGAGCCACCGAGTTCTGCTAATGTTGGAGAAAGAGTTACATTCCCAGGGTTTGAAGGTGATCCTGATGAACTGTTGAACCCAAAGAGGAAAGTTTGGGAAACATTGCAAGTGGATCTGCACACTAATGAGGAACTAGTTGCGTGCTTCAAAAATGTTCCACTCACCACATCGTCTGGCATTTGCAAGGTCTCATCCATACAAAATGGATCCATTAGGTAG	2421	0.4234	MAEDQKAPKLLPVEGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARYCRLRGYNAIYMCGTDEYGTATETKALEENCSPKEICDKYHAIHKDIYNWFNISFDEFGRTSSPQQTEVCQAIFKKLWENNWLSENTMQQLYCDTCKKFLADRLVEGNCPTPGCEYDSARGDQCEKCGKLLNPTELKDPRCKVCQNTPRIRDTDHLFLELPLLKERLEKYINEMSVVGLWSQNAIQTTYSWLKEGLKPRCITRDLKWGVPVPHEKYSDKVFYVWFDAPIGYVSITSCYTTDWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYEAGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFSWSDLQAKLNSELLNNLGNFVNRVLSFIAKPAGQGYDSIIPDVADVSSDSHAPTKKLAERVSAYLEQYIEAMEKVKLKQGLKSAMSISSEGNGYLQESEFWRLYKENKPLCSLVMKTAVGVVYILACLLESFMPSFTLEVFKQLNLSAELHLSLCDEKGDINKAKRPWEIINAGHKIGKPQPLFKELKDEEVEFFRKKFAGSQADRILRAEAEAEAGKVAEQLKKTKVSDGNGKKKASAKSSNEPKTKAASESEITITRLDIRVGLIKKAQKHPDADSLYVEEIDVGEEQPRTVVSGLVKYIPLDEMQNRKVCVLCNLKPATMRGIKSQAMVLAASNNDHTKVELVEPPSSANVGERVTFPGFEGDPDELLNPKRKVWETLQVDLHTNEELVACFKNVPLTTSSGICKVSSIQNGSIR*	807

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Dod03g2663	806	Gene3D	-	154	190	IPR029038	-
Dod03g2663	806	SUPERFAMILY	Methionyl-tRNA synthetase (MetRS), Zn-domain	154	190	IPR029038	-
Dod03g2663	806	CDD	tRNA_bind_EMAP-II_like	643	747	-	-
Dod03g2663	806	ProSitePatterns	Aminoacyl-transfer RNA synthetases class-I signature.	26	37	IPR001412	GO:0000166\|GO:0004812\|GO:0005524\|GO:0006418
Dod03g2663	806	Gene3D	-	402	574	-	-
Dod03g2663	806	Pfam	Putative tRNA binding domain	650	744	IPR002547	GO:0000049
Dod03g2663	806	Gene3D	HUPs	18	401	IPR014729	-
Dod03g2663	806	TIGRFAM	metG: methionine--tRNA ligase	19	556	IPR014758	GO:0000166\|GO:0004825\|GO:0005524\|GO:0006431
Dod03g2663	806	SUPERFAMILY	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	405	588	IPR009080	GO:0000166\|GO:0004812\|GO:0005524\|GO:0006418
Dod03g2663	806	Pfam	Anticodon binding domain of methionyl tRNA ligase	442	591	IPR041872	-
Dod03g2663	806	CDD	MetRS_core	18	388	IPR033911	GO:0004825\|GO:0006431
Dod03g2663	806	Pfam	tRNA synthetases class I (M)	19	413	IPR015413	GO:0000166\|GO:0004812\|GO:0005524\|GO:0006418
Dod03g2663	806	Gene3D	-	643	806	IPR012340	-
Dod03g2663	806	PRINTS	Methionyl-tRNA synthetase signature	21	34	IPR033911	GO:0004825\|GO:0006431
Dod03g2663	806	PRINTS	Methionyl-tRNA synthetase signature	102	113	IPR033911	GO:0004825\|GO:0006431
Dod03g2663	806	PRINTS	Methionyl-tRNA synthetase signature	54	68	IPR033911	GO:0004825\|GO:0006431
Dod03g2663	806	PRINTS	Methionyl-tRNA synthetase signature	400	411	IPR033911	GO:0004825\|GO:0006431
Dod03g2663	806	PRINTS	Methionyl-tRNA synthetase signature	305	320	IPR033911	GO:0004825\|GO:0006431
Dod03g2663	806	PRINTS	Methionyl-tRNA synthetase signature	270	281	IPR033911	GO:0004825\|GO:0006431
Dod03g2663	806	MobiDBLite	consensus disorder prediction	611	640	-	-
Dod03g2663	806	PANTHER	METHIONINE--TRNA LIGASE	6	806	IPR023458	GO:0004825
Dod03g2663	806	SUPERFAMILY	Nucleotidylyl transferase	16	400	-	-
Dod03g2663	806	ProSiteProfiles	tRNA-binding domain profile.	644	747	IPR002547	GO:0000049
Dod03g2663	806	Hamap	Methionine--tRNA ligase [metG].	17	586	IPR023458	GO:0004825
Dod03g2663	806	PANTHER	METHIONINE--TRNA LIGASE CYTOPLASMIC	6	806	-	-
Dod03g2663	806	MobiDBLite	consensus disorder prediction	611	630	-	-
Dod03g2663	806	SUPERFAMILY	Nucleic acid-binding proteins	645	805	IPR012340	-
Dod03g2663	806	CDD	Anticodon_Ia_Met	397	532	IPR041872	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod03g2663	Dod-Chr3	58182311	58189946	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod03g2663	K01874		-	gmx:100809861	1441.4