Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2617 ATGGGAGTGATTGTTGGGCTTGAAATCAATGCAAATTCTGCTTCTGCTATGCATTATTGTGGGAACTCGTTCTCTTCCTCTGCTGTTCCTGTTTCTTCGAGACCTTTCTTTGGTAGTGCTCTGAATTCGAGGGTTCAAAAGAAGTTTCGTGTCTTTCATGTTCGAAAGCTCAATTTTGGGGCGGTTAGTGCTTCACTGAATGGCGGTGGCTCTAATGCGGGGTTGCTTAGTGAGATGCTTCTTCCAAAAGACTTGGAATTTAAGCCATCTTTCGATGAGTATTTGAAGGCTATGGAATCTGCTAGAAATATTAGGGGGAAGGAACATGCTGATAATAATGGTGCTGCTTCTCGAAAACACAAGATAAGGGAAAAGGGTGTGTCTGGGAAACCAAGGATTGAAGGAGTAGATAAGAGATTTCAAAGGTTTGGAGAGAAAGGCAATGAAAAAGACGATGGGTTGGAAAAAGAAGGGTCCTTCAGAAGTAAGGTTAGAGGAGCAGGTACTAAAGGGGTTAACAATGAGCATGATGGGAAAGGAAGCAACCTTGTTGAAAATGTGAGAGAAGATAGGAGGTTGAAACATAAGAGTAATAGTTTAGGACAGGAAACTGATGAATGTAGTGTGAGTAGGAGTCAAGGAAAAAGTAGAATTGGAAGGACAAGCAATAACATGGCTAAGACTAATTCGAATAGTAGCCGTGGGAGGGTTATTGAGAGGGGAGTCACTAATGAGATATATTCTTCAAAGGTATCTGGAGAAAAGGTTGGTAGTAGCAGACAAAGGGATTACAACTCACAGGGTAAAGCACCTGGTGGAGATAAAATTGTTGCTAATTACAAAGTTATGGACAGAGGGATTGAGCGAAGGCAAAATGAGCAGGGAAATTTGAAATTGAATGGAAGCAGTAAGCGTCACCTCGATAGAGGTTATGATTCTGATGACTTGGATGTGGAACGAGTGGCATTCAAGAATCTTGAGGACTTAAACAATGTTATCAGCAAAACGCACTTTTCACATAAGGCAATGGAGGAGAGAATCCAAAAGCTAGCCAAGTTGTTGAATGGTGCAGATATCAATTTGGCTGAATGGATGTTTTCTAAGATGATGGGAAGCGCAAAGATCAAGTTTAATGACTATTCTATAACAAGGGTTATCATAATCTTGGGAAAACTAGGAAACTGGCGGCGAGTGATACAGGTCATTGAATGGCTTCTAAGGCGTGAGCGTTTCAAATCCCACAAGCTAAGGCATATATACACTGCTGCTCTTGATGCACTTGGAAAGTCGAAGAGACCTGTAGAGGCGCTAAATGTATTTCATGCAATGCAGCAACAAAGGTCTTCATATCCTGATTTAGTAGCTTATCATAGTATTGCTGTTACCCTTGGACAAGCAGGGCACATGAAGGAACTCTTTGATGTGATTGATATTATGCGATCGCCACCAAAGAAGAAGTTCAAAACAGGGCCACTTGAGAAATGGGACCCCAGGCTGGAACCAGATATCGTAGTCTATAATGCAGTCCTTAATGCTTGTGTTAGGAGGAAACAATGGGAAGGGGCCTTTTGGGTTTTACAGCAGTTAAAGAAGCAAGGCTTACAGCCTTCTGCTACAACTTATGGCCTAGTTATGGAGGTGATGCTTTCATGTGACAAGTACAATTTGGTTCATGAGTTTTTCAGAAAACTTCAGAAGTCTTGTATTCCGAATTCATTGACATATAGAGTTCTCTTGAATACACTTTGGAAAGAGGGAAAAACTGACGAGGCTATTTTAGCTGTCCAGGAAATGGAAAGACGTGGAATTGTAGGTTCTGCTTCTCTTTACTATGATCTAGCTCGATGCCTGTGTTCAGCAGGAAGAAGTCGCGAGGCACTGATGCAGATAGACAAGATCTGTAAGGTTGCAAATAAACCACTGGTAGTGACCTACACTGGCCTGATGCAAGCAAGTCTAGACTCTGGAAAAATTCAAGATGGGGCCTATATTTTTGAGAAAATGAAGGAAATTTGTGCTCCAAATCTGGTTACTTGTAACATAATGCTGAAAGCTTACCTTGAACAAGGGATGTTTCAAGAAGCTAAAGAGCTGTTTGAGCAGATGTCAGAAAACACAAGTCAACTGAGGAGCAGTACTGATTACAAAATGCAGGTGATACCAGATATTTACACATTCAACATCATGTTAGATGCATGCGTTGCAGAGAAGAGATGGGATTATTTTCACTCTGTCTATCAAAGGATGTTGTACCATGGTTTCCACTTCAATCCAAAACGTCATCTTCGAATGATATTGGAGGCTTCAAGATCTGGAAAGGATGAGCCTTTGGAGATAACATGGAAGCACTTAGCTGATACAGACCGAACTCCGCCAGTTAGTATGATCAAGGAAAGGTTCTGTGTGAAACTTGAAAAAGATGACTGTGATGGTGCTCTTGCATGTATCACTAGTTATCCCCCGAAAGACTTGGAGCCATTTTCCAAGTCATCTTGGTTGAATTTATTTAAAGAAAATTCTCAGCGGTTTCAGAAGGATACACTTGTTAGACTAATGAACGAGATTACCAACATAGTTTCTAATAGTAGCATGCAAAATCCAACACTTGTATATTTATTGCAATCATGCAAAGAATTTTTTAGTGCCACTGACGTCAGTGTAGCTGACATGGATTCAGTGAAAAGTGTATTTGCAGGAGAAAGAAAACTTGTAGCCAGTTCTAGATGA 2727 0.4085 MGVIVGLEINANSASAMHYCGNSFSSSAVPVSSRPFFGSALNSRVQKKFRVFHVRKLNFGAVSASLNGGGSNAGLLSEMLLPKDLEFKPSFDEYLKAMESARNIRGKEHADNNGAASRKHKIREKGVSGKPRIEGVDKRFQRFGEKGNEKDDGLEKEGSFRSKVRGAGTKGVNNEHDGKGSNLVENVREDRRLKHKSNSLGQETDECSVSRSQGKSRIGRTSNNMAKTNSNSSRGRVIERGVTNEIYSSKVSGEKVGSSRQRDYNSQGKAPGGDKIVANYKVMDRGIERRQNEQGNLKLNGSSKRHLDRGYDSDDLDVERVAFKNLEDLNNVISKTHFSHKAMEERIQKLAKLLNGADINLAEWMFSKMMGSAKIKFNDYSITRVIIILGKLGNWRRVIQVIEWLLRRERFKSHKLRHIYTAALDALGKSKRPVEALNVFHAMQQQRSSYPDLVAYHSIAVTLGQAGHMKELFDVIDIMRSPPKKKFKTGPLEKWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKKQGLQPSATTYGLVMEVMLSCDKYNLVHEFFRKLQKSCIPNSLTYRVLLNTLWKEGKTDEAILAVQEMERRGIVGSASLYYDLARCLCSAGRSREALMQIDKICKVANKPLVVTYTGLMQASLDSGKIQDGAYIFEKMKEICAPNLVTCNIMLKAYLEQGMFQEAKELFEQMSENTSQLRSSTDYKMQVIPDIYTFNIMLDACVAEKRWDYFHSVYQRMLYHGFHFNPKRHLRMILEASRSGKDEPLEITWKHLADTDRTPPVSMIKERFCVKLEKDDCDGALACITSYPPKDLEPFSKSSWLNLFKENSQRFQKDTLVRLMNEITNIVSNSSMQNPTLVYLLQSCKEFFSATDVSVADMDSVKSVFAGERKLVASSR* 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2617 908 MobiDBLite consensus disorder prediction 245 266 - -
Dod03g2617 908 TIGRFAM PPR: pentatricopeptide repeat domain 504 537 IPR002885 -
Dod03g2617 908 TIGRFAM PPR: pentatricopeptide repeat domain 419 452 IPR002885 -
Dod03g2617 908 TIGRFAM PPR: pentatricopeptide repeat domain 574 605 IPR002885 -
Dod03g2617 908 TIGRFAM PPR: pentatricopeptide repeat domain 724 750 IPR002885 -
Dod03g2617 908 TIGRFAM PPR: pentatricopeptide repeat domain 677 705 IPR002885 -
Dod03g2617 908 MobiDBLite consensus disorder prediction 202 238 - -
Dod03g2617 908 PANTHER OS01G0674700 PROTEIN 9 887 IPR044645 GO:0009658
Dod03g2617 908 MobiDBLite consensus disorder prediction 105 277 - -
Dod03g2617 908 MobiDBLite consensus disorder prediction 181 201 - -
Dod03g2617 908 Pfam PPR repeat 419 445 IPR002885 -
Dod03g2617 908 Pfam PPR repeat 574 603 IPR002885 -
Dod03g2617 908 Pfam PPR repeat 643 670 IPR002885 -
Dod03g2617 908 Pfam PPR repeat 724 754 IPR002885 -
Dod03g2617 908 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 571 605 IPR002885 -
Dod03g2617 908 PANTHER OS01G0674700 PROTEIN 9 887 - -
Dod03g2617 908 Gene3D Tetratricopeptide repeat domain 634 790 IPR011990 GO:0005515
Dod03g2617 908 Gene3D Tetratricopeptide repeat domain 568 633 IPR011990 GO:0005515
Dod03g2617 908 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 675 709 IPR002885 -
Dod03g2617 908 Pfam PPR repeat family 501 545 IPR002885 -
Dod03g2617 908 Pfam PPR repeat family 674 705 IPR002885 -
Dod03g2617 908 Gene3D Tetratricopeptide repeat domain 348 567 IPR011990 GO:0005515
Dod03g2617 908 MobiDBLite consensus disorder prediction 105 163 - -
Dod03g2617 908 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 722 756 IPR002885 -
Dod03g2617 908 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 502 536 IPR002885 -
Dod03g2617 908 SUPERFAMILY TPR-like 574 706 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2617 Dod-Chr3 57705576 57712763 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2617 522 782 Glycosyltransferase AT1G05670 20.818 4.32e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2617 - - aprc:113864568 1250.73