Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dod03g2607 | ATGGCTGTTGAGGCTTCTGATAAACCAATTTTGCCAGATAATTTTGATGATGACGACGATGATGGGCCGTTAACTATAAAAAGGTACACATCATCTAAGAAAAACCAATTGCATTCAGAAGCAAGGAAGCCAACTTCTCATAGTCAAGATGGACATTCATATAGACAGATATCTGGTCTGCCTACTTCAAATGGCCAATCTTCTAGCTCCAGCACACAGAAGGGTAATACTGTTCCATCAACTAAGGCTTCACCCTTGAGATCTCCTGTAGGTATCTCAAAACCATTGAATTCACCTGTATACTCCTCTTCTGCTAAGTTGCCTTTGGCAAATGCAAGATCTCCGTCTATAGGAGATAAACCAAAGCCTTGTTTGGAACAGAAAGCGACCATTGGTGTTAAGCAGGAAACAAAACCTATCAGTGATTCTACTAAAAATTATTGTGAAGATTCAGAGGATGAGGAGGATAATAAACCACTGAGTTCGAGGTTGAAGATGAACGTTAACCACAATAACAAAGTAACCCCTGTTGTTGTCAAGAAATCTTCCGATGATTCTGATGATGATGATAATATCCCTTTGTCAGCAAAGTTAATCCGGAATTCTAACTTGGGAAGAACATCTAGCAGTAACTATGATGACTCTGATCAGAAGAAGCCTATTTCAAAAGTTCAGAAAGAGCGGCAAAATGGTTCCGGTGCAAGTAATAAACTGGAAAGGCCATCTTCACTGCCGGTTAAGAGACCAATGGACAACAATAATTCTGTGAACTCTTCAGTGAAGAAGTCAAAGATCTCTGAACCAGCTGCATCCATAAAACCTAAGCAAGTCTCTGGGAAATGTGAGCCGAAGGTAGAGGATGATGACGACGACGATATTCCTATTTCCCAGAGAATGAAGAAGTCGGCCACGTCAGCTGATAAATCATCTTCCATGAAGAAGTCAGCCACGTCAGCTGATAAATCATCTTCCATAAAACAGAAGGTGACAAAGGTTACTAAAGTTAACAAGGCTGGTACCAAATCTTTTAAGAAACAGGCCAAGAACAAAAAGTTAAAAAAATCAGGTAGTGGCTCAGAATATTCCAAATCTTCAAAACTCCTTCCTAGCTCTGGTGATGGGCAGAAAAAATGGACTACTTTGGTTCACAATGGTGTCATTTTCCCTCCTCCTTACAAGCCCCATGGGGTAAAGATGCTCTATAAGGGTAAACCAGTTGATTTGACTCCTGAGCAAGAGGAGGTTGCTACAATGTATGCTGTCATGCGGGATACAGATTACATGCAAAAAGATAAGTTCAAGGAAAATTTCTGGAATGACTGGCGAAAGTTACTGGGAAGGAATCATGTAATTCAGAATTTGAAAGATTGTGACTTTACCCCGATTTATGACTGGTGCCAAAGTGAAAAGGAGAAGAAGAAACAAATGACTTCAGAGGAGAAGAAGGCCTTGAAGGAGGAGAAGACAAAACAAGAGGAGAAATACATGTGGGCCATTGTTGATGGTGTTAAAGAGAAGGTTGGAAATTTTAGAGTTGAGCCACCAGGATTGTTCCGAGGCCGTGGAGAGCATCCTAAGATGGGAAAATTGAAAAGTCGCATTCATCCAAGTGATATCACAATTAATATTGGAAAGGATGCCCCAATTCCTGAATGTCCTATTCCTGGTGAAAAGTGGAAGGAGATAAGACATGACAATACCGTTACATGGTTGGCCTTTTGGAGTGACCCGATCAATCCAAAGTTATTTAAATACGTGTTTCTGGCAGCTAGTAGTTCCTTGAAGGGTCAAAGTGATAAGGAAAAGTATGAGAAAGCTAGGATGTTGAAGGATTATATAGGGAACATTAGGGCTGCTTACACAAAAAATTTTACGAGTAAAGATATTACAAAGCAGCAAATAGCTGTTGCTACTTATCTTATTGATAAGCTAGCTCTGAGGGCTGGCAATGAGAAGGATGATGATGAAGCTGATACCGTAGGTTGTTGCACATTGAAAGTGGAGAATGTGACAAGAGAAGCTCCCAACAAGCTGAAGTTTAACTTCCTTGGTAAAGATTCAATCAAGTACGAGAATACCGTTGAGGTTGAGCTTCCTGTTTACAACGCAATTTTGAAGTTCCAAAAAGATAAGGGTCCTGGTGATGATCTTTTTGACAAGCTGGATACAAGCAAATTAAATGCTCATCTGAAGGAACTCATGCCTGGCCTAACAGCGAAAGTCTTCCGTACATTCAACGCATCTATCACATTGGATGATATGTTGAACAAGGAAACTAAAGGTGGAGATGCTGCAGAAAAGATTGTTGTTTATCAGCATGCAAATAAACAGGTTGCAATCATTTGTAATCATCAGCGCAGTGTTTCAAAATCCCACACGGCACAAATGTCCAAGTTAAATGAAAAGATTGATGAGCTCCAGGCTGTTCTGAAGGAGCTAAAAATGGATTTGGACAGGGCAAGGAAAGGAAAGCCCCCCTTAAAAAGTCCAGATGGAAAGAGGAAAAAGAACTTAACTCCTGAAGCGCTAGAGAAAAAGATATCCCAAACCAATGCAAAAATTGAGAAAATGCAACGCGATATGAAGACAAAAGAGGATCTAAAAACTGTGGCATTAGGCACATCCAAGATAAACTACCTTGACCCTAGGATTACTGTTGCCTGGTGCAAACGGCATGAGGTTCCTATTGAAAAGATATTCAACAAATCGCTGCTGGCTAAATTTGCTTGGGCAATGGATGTGGATCCTGACTTCAGATTCTGA | 2763 | 0.4046 | MAVEASDKPILPDNFDDDDDDGPLTIKRYTSSKKNQLHSEARKPTSHSQDGHSYRQISGLPTSNGQSSSSSTQKGNTVPSTKASPLRSPVGISKPLNSPVYSSSAKLPLANARSPSIGDKPKPCLEQKATIGVKQETKPISDSTKNYCEDSEDEEDNKPLSSRLKMNVNHNNKVTPVVVKKSSDDSDDDDNIPLSAKLIRNSNLGRTSSSNYDDSDQKKPISKVQKERQNGSGASNKLERPSSLPVKRPMDNNNSVNSSVKKSKISEPAASIKPKQVSGKCEPKVEDDDDDDIPISQRMKKSATSADKSSSMKKSATSADKSSSIKQKVTKVTKVNKAGTKSFKKQAKNKKLKKSGSGSEYSKSSKLLPSSGDGQKKWTTLVHNGVIFPPPYKPHGVKMLYKGKPVDLTPEQEEVATMYAVMRDTDYMQKDKFKENFWNDWRKLLGRNHVIQNLKDCDFTPIYDWCQSEKEKKKQMTSEEKKALKEEKTKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKSRIHPSDITINIGKDAPIPECPIPGEKWKEIRHDNTVTWLAFWSDPINPKLFKYVFLAASSSLKGQSDKEKYEKARMLKDYIGNIRAAYTKNFTSKDITKQQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVTREAPNKLKFNFLGKDSIKYENTVEVELPVYNAILKFQKDKGPGDDLFDKLDTSKLNAHLKELMPGLTAKVFRTFNASITLDDMLNKETKGGDAAEKIVVYQHANKQVAIICNHQRSVSKSHTAQMSKLNEKIDELQAVLKELKMDLDRARKGKPPLKSPDGKRKKNLTPEALEKKISQTNAKIEKMQRDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWAMDVDPDFRF* | 921 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dod03g2607 | 920 | MobiDBLite | consensus disorder prediction | 819 | 839 | - | - | |
| Dod03g2607 | 920 | Pfam | Eukaryotic DNA topoisomerase I, catalytic core | 591 | 816 | IPR013500 | GO:0003677|GO:0003917|GO:0006265 | |
| Dod03g2607 | 920 | MobiDBLite | consensus disorder prediction | 196 | 211 | - | - | |
| Dod03g2607 | 920 | Gene3D | - | 393 | 476 | IPR013034 | GO:0003917|GO:0006265 | |
| Dod03g2607 | 920 | PANTHER | DNA TOPOISOMERASE I | 132 | 920 | - | - | |
| Dod03g2607 | 920 | MobiDBLite | consensus disorder prediction | 358 | 374 | - | - | |
| Dod03g2607 | 920 | SUPERFAMILY | DNA breaking-rejoining enzymes | 591 | 917 | IPR011010 | GO:0003677 | |
| Dod03g2607 | 920 | Coils | Coil | 466 | 494 | - | - | |
| Dod03g2607 | 920 | SUPERFAMILY | Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment | 375 | 590 | IPR036202 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Dod03g2607 | 920 | Coils | Coil | 789 | 823 | - | - | |
| Dod03g2607 | 920 | CDD | Topo_IB_C | 597 | 790 | IPR013500 | GO:0003677|GO:0003917|GO:0006265 | |
| Dod03g2607 | 920 | MobiDBLite | consensus disorder prediction | 95 | 110 | - | - | |
| Dod03g2607 | 920 | MobiDBLite | consensus disorder prediction | 21 | 49 | - | - | |
| Dod03g2607 | 920 | MobiDBLite | consensus disorder prediction | 50 | 87 | - | - | |
| Dod03g2607 | 920 | MobiDBLite | consensus disorder prediction | 162 | 179 | - | - | |
| Dod03g2607 | 920 | PANTHER | DNA TOPOISOMERASE I | 132 | 920 | - | - | |
| Dod03g2607 | 920 | PRINTS | Eukaryotic DNA topoisomerase I signature | 656 | 670 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Dod03g2607 | 920 | PRINTS | Eukaryotic DNA topoisomerase I signature | 873 | 884 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Dod03g2607 | 920 | PRINTS | Eukaryotic DNA topoisomerase I signature | 633 | 652 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Dod03g2607 | 920 | PRINTS | Eukaryotic DNA topoisomerase I signature | 678 | 694 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Dod03g2607 | 920 | PRINTS | Eukaryotic DNA topoisomerase I signature | 736 | 750 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Dod03g2607 | 920 | PRINTS | Eukaryotic DNA topoisomerase I signature | 517 | 526 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Dod03g2607 | 920 | MobiDBLite | consensus disorder prediction | 180 | 194 | - | - | |
| Dod03g2607 | 920 | CDD | Topoisomer_IB_N | 377 | 589 | - | - | |
| Dod03g2607 | 920 | Pfam | Eukaryotic DNA topoisomerase I, DNA binding fragment | 377 | 588 | IPR008336 | GO:0003677|GO:0003917|GO:0006265 | |
| Dod03g2607 | 920 | Coils | Coil | 847 | 867 | - | - | |
| Dod03g2607 | 920 | Gene3D | DNA Topoisomerase I, domain 2 | 373 | 588 | IPR013030 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Dod03g2607 | 920 | Pfam | C-terminal topoisomerase domain | 852 | 920 | IPR025834 | - | |
| Dod03g2607 | 920 | SMART | topeu | 517 | 893 | IPR013499 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Dod03g2607 | 920 | ProSitePatterns | Eukaryotic DNA topoisomerase I active site. | 866 | 884 | IPR018521 | GO:0003677|GO:0003917|GO:0006265 | |
| Dod03g2607 | 920 | Gene3D | Topoisomerase I; Chain A, domain 3 | 591 | 739 | IPR014711 | GO:0003677|GO:0003917|GO:0006265 | |
| Dod03g2607 | 920 | Gene3D | - | 740 | 920 | IPR014727 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Dod03g2607 | 920 | MobiDBLite | consensus disorder prediction | 1 | 374 | - | - | |
| Dod03g2607 | 920 | MobiDBLite | consensus disorder prediction | 247 | 265 | - | - | |
| Dod03g2607 | 920 | MobiDBLite | consensus disorder prediction | 298 | 340 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Dod03g2607 | K03163 | - | gmx:100799837 | 1350.11 |