Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2600 ATGGCTACTGCTGCAGTTATTGGACTCAGTGGAGGAAAGAGGCTTTTGAGTTCATCTTACCATTACTCTGATGTCGCGGAAAAGCATTCCTTTGGCAGTGATTTTGGATCCACACACTATCAGATTGCTCCAACAAAATCTGTGATAATTGCTAAGAAGTCATCATCCAACTACACCCAAACTTTTCCAACCTCCAACCGCCAGAATCAGTCCATCAAGGCTCTTAAGGAACATGCTGATGTTGCGGCGGCCACTTCTGATCCGTGGTTTCACGAAGACAGTTCTGGTGACTTGGAGGTGGAGAGCTCTGAGATGGGCTATTCTGTGGAGGCTCTTCTTCTGCTGCAGAAGTCAATGCTGGAAAAGCAGTGGAACCTTTCATTTGAAAGGGAAGTGCTAACCGAGCATTCGAGAAGTGAAAAAAGGAAAGTGGCAGTAACTTGTTCTGGGGTGTCTGCAAGGCAAAGAAGGATGAATACTAAGAGGAAGACCGCCGGTAAAACTGGCGCGATGCCGCAACCTTGTGCTGCTATGCAGCTGAGGTCTGTCATCAGTCCAGAGCTGCTTCAAAATCGTTTGAAGGGCTATGTGAAAGGAATAGTGAGTGAGCAACTGCTCTCTCATGCTGAAGTTGTAAGCCTATCAGAGAAAATAAGAGCTGGACTTTCCTTAGAGGAGCACAAATCCAGACTGAAGGAAAGACTAGGATGTGAACCCTCTGAAGATCAAGTTGCAACTTCATTGAAGATTTCTCGGGCTGAACTGAGAGCAAAAATGATAGAGTGCTCTTTGGCAAGAGAAAAGTTGGCTATGAGCAATGTTCGCTTAGTTTTGTCTATTGCTCAAAGATATGATAATATGGGTGCTGAAATGGCTGACCTTGTTCAGGGTGGTTTGATTGGACTTCTTCGTGGCATTGAGAAGTTTGATTCTTCAAAGGGGTTTAAGATTTCAACTTATGTTTATTGGTGGATTCGCCAGGGTGTATCAAGAGCTTTGGTTGAAAATTCAAGAACACTGAGATTGCCGACTCATATACATGAGAGATTATCTTTAATCCGCAATGCAAAGTTTAAACTGGAAGAAAGAGGCATTAATCCAACTGTCGAAAGGATTGCAAAATGCCTTAATATGTCTCAAAAGAAAGTCAGAAATGCTACTGAGGCAATGAGTAAAATTTTCTCACTAGATAGAGAGGCGTTCCCATCTTTGAATGGTCTTCCGGGAGAAACTCATCATAGTTATATTGCAGATAATCGCCAGGAGAACATCCCATGGAATAGAGTAGATGAGTGGGCACTAAAGGATGAAGTGAGTAAACTCCTTAATTCGACTCTTGTGGAAAGAGAGAGAGAGATCATTCGTCTTTATTATGGATTGGATAGAGAATCTCTTACATGGGAGGACATTAGTAAACGGATAGGGTTGTCAAGAGAGAGAGTAAGACAAGTTGGACTTGTTGCATTGGAGAAACTAAAACATGCCGCGAGGAAGAAAGGGATGGAGGCCATGCTTTTGAAACATTAG 1527 0.4303 MATAAVIGLSGGKRLLSSSYHYSDVAEKHSFGSDFGSTHYQIAPTKSVIIAKKSSSNYTQTFPTSNRQNQSIKALKEHADVAAATSDPWFHEDSSGDLEVESSEMGYSVEALLLLQKSMLEKQWNLSFEREVLTEHSRSEKRKVAVTCSGVSARQRRMNTKRKTAGKTGAMPQPCAAMQLRSVISPELLQNRLKGYVKGIVSEQLLSHAEVVSLSEKIRAGLSLEEHKSRLKERLGCEPSEDQVATSLKISRAELRAKMIECSLAREKLAMSNVRLVLSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHIHERLSLIRNAKFKLEERGINPTVERIAKCLNMSQKKVRNATEAMSKIFSLDREAFPSLNGLPGETHHSYIADNRQENIPWNRVDEWALKDEVSKLLNSTLVEREREIIRLYYGLDRESLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKGMEAMLLKH* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2600 508 Gene3D - 340 391 IPR036388 -
Dod03g2600 508 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 265 495 IPR014284 GO:0003700|GO:0006352|GO:0006355
Dod03g2600 508 Gene3D RNA Polymerase Primary Sigma Factor 92 339 - -
Dod03g2600 508 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 1 508 - -
Dod03g2600 508 Gene3D - 424 502 IPR036388 -
Dod03g2600 508 PANTHER RNA POLYMERASE SIGMA FACTOR SIGA 1 508 - -
Dod03g2600 508 ProSitePatterns Sigma-70 factors family signature 1. 293 306 IPR000943 GO:0003700|GO:0006352|GO:0006355
Dod03g2600 508 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 341 397 IPR013324 -
Dod03g2600 508 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 192 339 IPR013325 GO:0003700|GO:0006352|GO:0006355
Dod03g2600 508 CDD Sigma70_r4 444 493 - -
Dod03g2600 508 PRINTS Major sigma-70 factor signature 317 325 IPR000943 GO:0003700|GO:0006352|GO:0006355
Dod03g2600 508 PRINTS Major sigma-70 factor signature 481 492 IPR000943 GO:0003700|GO:0006352|GO:0006355
Dod03g2600 508 PRINTS Major sigma-70 factor signature 293 306 IPR000943 GO:0003700|GO:0006352|GO:0006355
Dod03g2600 508 PRINTS Major sigma-70 factor signature 446 458 IPR000943 GO:0003700|GO:0006352|GO:0006355
Dod03g2600 508 PRINTS Major sigma-70 factor signature 466 481 IPR000943 GO:0003700|GO:0006352|GO:0006355
Dod03g2600 508 Pfam Sigma-70 region 2 271 338 IPR007627 GO:0003700|GO:0006352|GO:0006355
Dod03g2600 508 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 422 500 IPR013324 -
Dod03g2600 508 Pfam Sigma-70, region 4 445 494 IPR007630 GO:0003700|GO:0006352|GO:0006355
Dod03g2600 508 Pfam Sigma-70 region 3 348 421 IPR007624 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2600 Dod-Chr3 57588378 57593508 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2600 K03086 - gmx:100801884 837.025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2600 03 57588378 57593508 Dod03g2600 03 57588378 57593508 ECH