Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2580 ATGAAACCAGAATCATTGCTGCTAAAGCAGTCTTCTGGTGCGGTTAGGAATGAAAAACCCGCTGAGAAGAATCAGCTGCAATTCGGTTCTGTGAATGCTGCTACCGTTGAATCAAGTAACCGGCTTAATTCACAAAGAGCACCAGATAGTGCTCCTCCCTCTTATTCTCAGAAATGCAATGGAGTAAGCAGTGTCAGTGGTAATTTACCTGGAGCATCAGGTATTATAAAGGAGAATGGCAGTATTGCCAATCACTCCATCAGTCCCTTGAGTACTGTTAGTGTAAACGAAGTTAAAGAAGATAATGTGGATCCTGTCTCATCGCTTGATGACGATGGTCCTTCGAACCAGTTTATGAATTTGAGCCTAGATGCTTCTGAGTCTGAAAGCCTGAAAAATGTTTGGAAAATTGGCAGTGGAGATGATTCCTCGTCAAAATTATCTAATCCAGACTCCAAAAAGGCACCTAATGGCCATGTTGTTACACACGTTAACGACCTACTGCCTCGGGGCCTAATTAATTCAGGGAATCTATGCTTTCTTAATGCAACCGTGCAGGCTCTCTTGTCTTGTTCTCCTTTTGTTCAGCTTTTGCAGGAGTTAAGAACTCGCAGCATTCCTAAGGTTGGTTATCCGACGTTGACTGCATTTGCTGAGTTTGTAACTCAATTTGACGTGCCAAGCACAACCAACTTAAAGAAGAAAGATACAAATTCTTTTGAGACTGGAAAGCCTTTTCGCCCAGTTATGTTTGAAGGTGTTCTTAAAAATTTTACACCGGATGTGCCAAATAGCATCTCAGGAAGACCAAGGCAGGAAGATGCTCAGGAATTCTTGAGCTTTGTAATGGATCAAATGCATGATGAATTGCTGAAGCTCGAAGGACAGTCTGAAGATGATGAATGGGAAACAGTGGGGCCGAAGAATAAGTCTGCTGTGACAAGGACTCAAAGCTTTGTTCCATCAGAATTAAGTGGTATTTTTGGAGGACAACTGAGAAGTTTGGTTAAAGCTAAAGCAGGGAATAGAGCTTCTGCCACTGTTCAACCGTATCTGTTGCTCCATCTTGACATTTATCCTGATGCTGTTCACACTATTGAGGATGCACTTCACTTGTTTCCTGCACCAGAAACTCTTGAAGGGTACCGAACTTCATTCACTGGGAAGGCTGGCATTGTGACTGCAAGAAAGTCTGTGCAGATACAGACACTTCCAAAAATAATGATATTGCACCTGATGCGTTTCAGTTATGGAAGCCAAGGAAGCACTAAGTTGCATAAGCCTGTTCATTTTCCTCTCGAATTGGTATTGGGTCGGGACTTGCTTGTTTCGCCATCTACTGAGGGTCGAAGATATGAACTAGTTGCTACAATTACTCACCATGGAAGGGAGCCTTCAAAGGGGCACTACACAGCTGATGCCTTATACCCTAATGGTCAGTGGGTACGCTTTGATGATGCATCTGTTTTCGCTATTGGAGCCAACAAGGTGCTGCATGATCAGGCATATGTCCTCTTCTACAAGCAGCAGATGTGA 1536 0.4329 MKPESLLLKQSSGAVRNEKPAEKNQLQFGSVNAATVESSNRLNSQRAPDSAPPSYSQKCNGVSSVSGNLPGASGIIKENGSIANHSISPLSTVSVNEVKEDNVDPVSSLDDDGPSNQFMNLSLDASESESLKNVWKIGSGDDSSSKLSNPDSKKAPNGHVVTHVNDLLPRGLINSGNLCFLNATVQALLSCSPFVQLLQELRTRSIPKVGYPTLTAFAEFVTQFDVPSTTNLKKKDTNSFETGKPFRPVMFEGVLKNFTPDVPNSISGRPRQEDAQEFLSFVMDQMHDELLKLEGQSEDDEWETVGPKNKSAVTRTQSFVPSELSGIFGGQLRSLVKAKAGNRASATVQPYLLLHLDIYPDAVHTIEDALHLFPAPETLEGYRTSFTGKAGIVTARKSVQIQTLPKIMILHLMRFSYGSQGSTKLHKPVHFPLELVLGRDLLVSPSTEGRRYELVATITHHGREPSKGHYTADALYPNGQWVRFDDASVFAIGANKVLHDQAYVLFYKQQM* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2580 511 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 171 186 IPR018200 GO:0004843|GO:0006511
Dod03g2580 511 MobiDBLite consensus disorder prediction 23 62 - -
Dod03g2580 511 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 170 510 IPR028889 -
Dod03g2580 511 MobiDBLite consensus disorder prediction 1 62 - -
Dod03g2580 511 MobiDBLite consensus disorder prediction 139 158 - -
Dod03g2580 511 Pfam Ubiquitin carboxyl-terminal hydrolase 171 507 IPR001394 GO:0004843|GO:0016579
Dod03g2580 511 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 149 510 - -
Dod03g2580 511 Gene3D Cysteine proteinases 159 510 - -
Dod03g2580 511 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 452 470 IPR018200 GO:0004843|GO:0006511
Dod03g2580 511 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 149 510 - -
Dod03g2580 511 SUPERFAMILY Cysteine proteinases 167 509 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2580 Dod-Chr3 57471853 57475720 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2580 167 509 Miscellaneous Gene Families AT2G24640 30.000 4.56e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2580 K11841 - gmx:100799656 808.52