Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2574 ATGGATGGTTATGAAGCTACTAGGATTGTGTTCTCAAGGATCCAAAGCTTGGACCCTGAGAATGCTTCCAAGATCATGGGCGTTCTTCTGATTCAAGACCATGGTGAGAAGGAGATGATAAGGTTAGCATTTGGACCAGAAGCACTTGTTCACTCTGTGATTGTGAAAGCACGCAAGGACTTGGGTTTGCCTTCAAACTCTCCACCTACACCTTCAACTCCACCGTCTCCATCACCTTTTCTTGCAAACAGTACCAACCCAGTTCCCATTTCAAGGCAAAACTCAACTTCTTCTTCACGGCTTGGTGGGATCAGCCTCCCTCCTGCTCTAACTATACCAAACCCTTCTTCGAGCTCAGCTTCTTGGGGTGCCATCTCTGAGCTTCAAAACCCTGAAGACTTGATGAGCCCCAACAATTTGGTTGTTGGGTCGTCAACGACTTCATCTTCTTTGCCGTTCTATGCAAATGGAGGCTCAGATCCAATTGATGAGTTCCAGCTTCAGGACCAGCTTTCCTTCTTGAATGATGGTTCTCCAACTCTTGTTGGACACAAGAACCCTGATTTGTTCTACCCTCACTCAGATTTGTCTTCTAGTCCTACTAGTGGTGTTGACCCTGCTACTCTTTTCCCTTCTTATGGTTGGGGAGGGTCACTTCACAGGAGGAGTTGCTCAGTGAATGATGCTTGCTTGGGTTCTGAGGACCCTAATTCTGGGTTTGGGTGGAAGCCTTGCCTTTACTTTGCTAGAGGGTACTGCAAGAATGGCACTAGCTGCAGGTTCCTACATGGTGGTGGCCTTGGAGATGCTGAAGGTGCTGCAATGGTTGGTTCTCCCAGCAAGATTGAGATGATGGAGCAGTGCCATGAGCTCCTCAGATCTAAGACAGCTCAACAGCAAAGACTAGCTGCTGCTTCTCAGCTCATGGCCTCTTCTTCTTTTCCGTACTCCCCAAAGTGCATGAATTTCCTCTTGCAGCAGCAGCAAAATGATACTCAAAGAGCTGCAGCTGCAGCTCTTATGATGAATGAGGACTTGCACAAATTTGGGAGATCCAGGCTTGAAAGGAATGATTTTGCTTTGAACAGCCCTGGAATGGTTAACCCAGCTTCTAGGCAGATCTACTTGACCTTCCCAGCAGATAGCACTTTCAGAGAGGAAGATGTTTCAAATTACTTCAGCATTTATGGCCCAGTTCAAGATGTGAGGATCCCATATCAGCAGAAGCGCATGTTTGGTTTTGTTACCTTTGTTTATCCAGAGACTGTTAAGCTCATTCTCTCCAAAGGAAACCCTCATTTTGTGTGTGATGCCAGAGTGCTGGTTAAGCCTTACAAGGAGAAAGGCAAAGTCCCAGACAAGAAGCAGCAGCAACAGGTAGATAGGGATTTTTCACCTTGTGGCACTCCTACTGGACTAGATGCTAGAGACCAATATGATCTCCAACTTGGGGGAAGAATGTTCTATAATGCTCAAGACATGTTGTGGAGGAGGAAGTTGGAGGAGCAAGCTGATTTGCAGCAAGCACTTGAGCTCCAAAGTAGGAGGTTGATGGGTCTGCAACTCCTTGACATCAAGAAGCAACACCACCGTGCCCTTTCCACAGGGAGTCCAATTCCTTCCCCAACCCAATCTCCTAACATGTTCAATCAGAACCTTGTTCTTCCTTCCTTTCACAGCAGCACAGAGGCCCCAGAGGAGAGTGGTTCAAGTTCTGCTCCAGCTAGTACTGCACCAGTTTCTGTTGGTCAGCAGCAAGTGCAAGTCAACATTTCTGTTGGCAAGGAAGTTGGAGTCAATGGTGAGAATGGGTATAGTGATGGCAGTGGCAATGGCAAACAGAGCTCAAGTAATGAAGACCGTGATCTACAAGAATGTTTGGCGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCTACAAAAGCTGCTGGAGATTACATGGCTGCCTTCTCCAATGGACCTAATGAGACCATTGAATCAGATGCCTCAGCTGCATCTGCCAACTCCAAATTTGGCACTAATTCACTACTTCCATCAGCATCTGCTCTTGACGTGGGGACTTTCAAATCCTTTAACTGCCAAATACCTAGGTTCTCTTCTGGCCATGGAACTATTGGGATGTTAGCTGGCACCGGTGGACCGATTGGCATTTAG 2154 0.4712 MDGYEATRIVFSRIQSLDPENASKIMGVLLIQDHGEKEMIRLAFGPEALVHSVIVKARKDLGLPSNSPPTPSTPPSPSPFLANSTNPVPISRQNSTSSSRLGGISLPPALTIPNPSSSSASWGAISELQNPEDLMSPNNLVVGSSTTSSSLPFYANGGSDPIDEFQLQDQLSFLNDGSPTLVGHKNPDLFYPHSDLSSSPTSGVDPATLFPSYGWGGSLHRRSCSVNDACLGSEDPNSGFGWKPCLYFARGYCKNGTSCRFLHGGGLGDAEGAAMVGSPSKIEMMEQCHELLRSKTAQQQRLAAASQLMASSSFPYSPKCMNFLLQQQQNDTQRAAAAALMMNEDLHKFGRSRLERNDFALNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKKQQQQVDRDFSPCGTPTGLDARDQYDLQLGGRMFYNAQDMLWRRKLEEQADLQQALELQSRRLMGLQLLDIKKQHHRALSTGSPIPSPTQSPNMFNQNLVLPSFHSSTEAPEESGSSSAPASTAPVSVGQQQVQVNISVGKEVGVNGENGYSDGSGNGKQSSSNEDRDLQECLAHNLPDSPFASPTKAAGDYMAAFSNGPNETIESDASAASANSKFGTNSLLPSASALDVGTFKSFNCQIPRFSSGHGTIGMLAGTGGPIGI* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2574 717 MobiDBLite consensus disorder prediction 61 122 - -
Dod03g2574 717 SMART c3hfinal6 241 265 IPR000571 GO:0046872
Dod03g2574 717 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 705 - -
Dod03g2574 717 SUPERFAMILY RNA-binding domain, RBD 384 463 IPR035979 GO:0003676
Dod03g2574 717 Gene3D - 370 466 IPR012677 -
Dod03g2574 717 MobiDBLite consensus disorder prediction 596 622 - -
Dod03g2574 717 Gene3D - 233 325 - -
Dod03g2574 717 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 244 264 IPR000571 GO:0046872
Dod03g2574 717 MobiDBLite consensus disorder prediction 83 122 - -
Dod03g2574 717 SUPERFAMILY CCCH zinc finger 242 264 IPR036855 GO:0046872
Dod03g2574 717 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 384 429 IPR000504 GO:0003723
Dod03g2574 717 SMART rrm1_1 373 443 IPR000504 GO:0003723
Dod03g2574 717 MobiDBLite consensus disorder prediction 67 82 - -
Dod03g2574 717 ProSiteProfiles Zinc finger C3H1-type profile. 239 266 IPR000571 GO:0046872
Dod03g2574 717 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 372 448 IPR000504 GO:0003723
Dod03g2574 717 MobiDBLite consensus disorder prediction 531 584 - -
Dod03g2574 717 MobiDBLite consensus disorder prediction 449 471 - -
Dod03g2574 717 MobiDBLite consensus disorder prediction 534 584 - -
Dod03g2574 717 CDD RRM_AtC3H46_like 374 443 IPR034365 -
Dod03g2574 717 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED 1 705 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2574 Dod-Chr3 57399088 57403250 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2574 - - adu:107477482 1167.91