Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2458 ATGGCTGAGGAACCCCAAAAACCAGCTGAGGAAGTGGCGGCCGCCGTGGCTGTGCCTGAGCCTGAGCCTGAGCCTGTGCCTGTGCCTGAGAAGGAGACGCACCCCGACAAACCTATCGCTGAGGCTGAGGCTGAGGCTGAGAAGGAGGCACAGCCCGAAAAACCTGTGGCTGAACCTGAAGCTGGAAAGGAAGGGGATGGTGGCGCTGCAGGGAAGGTCGAAGAAGTGGCAGTAGTGAAGAAGCCCCTTGAAGGAAAGAATCAGATTACGCAGTCGGTGTCTTTCAAGGAGGAGACCAACGTGGTCGGCGACCTCCCCGAAGCACAGAAGAAGGCCCTCGATGAGCTCAAGCACCTTATTCAAGAAGCCCTCAACAAGCACGAGCTCTCCGCTCCCCCACCCCCACCACCACCCCCCAAGGAAGAGAAGAAAGAAGAAGAGGAGAAGAAGAAGGAAGAAGAGAAGAAGGAGGAAGAGGTGGTAGCAACTGAAGGAGAGAAGAAAGAAGAGGCGGTTGCAACTGAAGGAGAGAAGAACGAGGAGGCGGTGGCAGTGGAAGAAGGGAAGAAAGAAGAGGTGGTGGCAGTGGAAGAAGAGAAGAAACAAGAGGAGAAAACTGAGGAACCTAAAATCGAAGCTGATGCTCCTAAAGAGGCAGAGGCAGAGGCAACAAAGGTAGAAGGTGAAGAGGAGAAGAAGGAGGAGACGGTTGAGGTAGTTGCGGAGGTGGTGGAGAAAGCAGCAGCTACTAGAGTTGTGGACGAGGACGGTGCGAAGAGGGTGGAGGCTATTGAGGAGACCGTAGTCTCGTCATCATCAGCACCAGTCGAGGAAGCTGCTTCGACCTCAACCAAGGAGAAGGAGGCTGAGGCCGAGGCCAAAGTTGAGGAGGTGACTGCTCTCCCTCCAGAGGAGGTTTCGATATGGGGAATTCCCCTTCTGGCGGACGAGAGGAGCGACGTGATCCTGCTCAAGTTCCTGAGAGCGAGGGACTTCAAGGTGAAGGAAGCATTCACGATGATCAAGAACACCGTCCGCTGGAGAAAGGAGTTCGGGATCGACTCCCTCGTGGAGGAAGATCTCGGGAGCGATTGGGACAAGGTGGTGTACTCTCACGGGTACGACAAGGAAGGCCACCCTGTCTGCTACAACGTCTTCGGCGAGTTCGAGAACAAGGAGCTGTACCAGAGCACGTTCTCCGACGAGGAGAAGCGCCACAAGTTCATCAGGTGGAGGATCCAGTTCTTGGAGAAGAGCGTCAGGAAACTCGACTTCAGCCCTACTGGTATCTCCACCATCGTGCAGGTCAATGATCTCAAGAATTCGCCTGGACTCACCAAGAGGGACCTCAGGCTCGCTACCAACCAGGCCCTTCAGTTGCTTCAGGATAATTACCCTGAGTTCGTAGCCAAGCAGGTGTTTATCAACGTCCCGTGGTGGTACCTTGCCTTTTCGAGGATGATCAGTGCTTTCCTGACCCAGAGGACCAAGAGCAAATTTGTATTTGCTGGCCCATCTAAGTCCGCTGAAACCCTTTTCAAATATATAGCTCCAGAGCAAGTGCCAGTTCAATATGGTGGACTGAGCAGAGAGGGTGACCAGGAATTCACCACTGCTGACCCTGTTACAGAGGTTACTATCAAACCGTCTACAAAACATACTGTTGAGTTCCCATTTTCTGAGAAAGGCCATCTGGTTTGGGAACTCCGAGTTGTGGGTTGGGATGTGAACTATGGTGCTGAATTTGTGCCCAGCGCTGAGGATGGGTACACTGTGATAGTGCAGAAGAGCAGGAAAATTGCTCCCGCTGATGAAACAGTGATTACAAACACCTTCAAAATTGGCGAACCTGGCAAGGTTGTGCTCACCATCGATAACCAAACATCCAAGAAGAAGAAACTCCTCTACAGGTCCAAGACCAAACCCATATCCGAGTAA 1938 0.5294 MAEEPQKPAEEVAAAVAVPEPEPEPVPVPEKETHPDKPIAEAEAEAEKEAQPEKPVAEPEAGKEGDGGAAGKVEEVAVVKKPLEGKNQITQSVSFKEETNVVGDLPEAQKKALDELKHLIQEALNKHELSAPPPPPPPPKEEKKEEEEKKKEEEKKEEEVVATEGEKKEEAVATEGEKNEEAVAVEEGKKEEVVAVEEEKKQEEKTEEPKIEADAPKEAEAEATKVEGEEEKKEETVEVVAEVVEKAAATRVVDEDGAKRVEAIEETVVSSSSAPVEEAASTSTKEKEAEAEAKVEEVTALPPEEVSIWGIPLLADERSDVILLKFLRARDFKVKEAFTMIKNTVRWRKEFGIDSLVEEDLGSDWDKVVYSHGYDKEGHPVCYNVFGEFENKELYQSTFSDEEKRHKFIRWRIQFLEKSVRKLDFSPTGISTIVQVNDLKNSPGLTKRDLRLATNQALQLLQDNYPEFVAKQVFINVPWWYLAFSRMISAFLTQRTKSKFVFAGPSKSAETLFKYIAPEQVPVQYGGLSREGDQEFTTADPVTEVTIKPSTKHTVEFPFSEKGHLVWELRVVGWDVNYGAEFVPSAEDGYTVIVQKSRKIAPADETVITNTFKIGEPGKVVLTIDNQTSKKKKLLYRSKTKPISE* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2458 645 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 358 533 IPR001251 -
Dod03g2458 645 Coils Coil 186 206 - -
Dod03g2458 645 SUPERFAMILY CRAL/TRIO domain 368 529 IPR036865 -
Dod03g2458 645 ProSiteProfiles GOLD domain profile. 509 640 IPR009038 -
Dod03g2458 645 PANTHER PATELLIN-1 1 645 IPR044834 GO:0008289
Dod03g2458 645 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 542 637 IPR036598 -
Dod03g2458 645 Coils Coil 140 166 - -
Dod03g2458 645 MobiDBLite consensus disorder prediction 1 102 - -
Dod03g2458 645 MobiDBLite consensus disorder prediction 138 237 - -
Dod03g2458 645 SMART sec14_4 362 530 IPR001251 -
Dod03g2458 645 MobiDBLite consensus disorder prediction 118 237 - -
Dod03g2458 645 Pfam CRAL/TRIO, N-terminal domain 304 343 IPR011074 -
Dod03g2458 645 MobiDBLite consensus disorder prediction 25 70 - -
Dod03g2458 645 SUPERFAMILY CRAL/TRIO N-terminal domain 271 360 IPR036273 -
Dod03g2458 645 SMART CRAL_TRIO_N_2 319 344 IPR011074 -
Dod03g2458 645 Gene3D - 278 350 - -
Dod03g2458 645 Pfam CRAL/TRIO domain 367 527 IPR001251 -
Dod03g2458 645 Gene3D - 366 544 IPR036865 -
Dod03g2458 645 Gene3D GOLD domain 545 640 - -
Dod03g2458 645 PANTHER PATELLIN-LIKE PROTEIN 1 645 - -
Dod03g2458 645 CDD SEC14 364 528 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2458 Dod-Chr3 56087343 56090216 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2458 323 507 Acyl Lipid Metabolism Gene Families AT5G47730 28.856 1.17e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2458 - K19996 tcc:18593040 615.15