Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2453 ATGGAGGACATTGAGGATTTGCTTATTGACAGCGCAACCGGAACTCCACCGGGCTTTCGGCTGCCTGTAGCCGCTGTTGGAACAAACACTAAGAACAAGAAGAATCATCATCTCCGGAATCACAAACTTCACACCAATCACGATCTACGCTCTTCTTCTGATGCTTCAATCCCTGGCACTCAGACTATCTACATCAAGACCTTCGGATGCTCCCATAACCAGAGCGATAGCGAATACATGGCTGGCCAGCTTTCAGCCTTTGGCTATTCCTTGACTGACTATCCTGACCAAGCACATCTCTGGCTCATCAACACTTGCACAGTGAAATCCCCAAGTCAATCTGCCATGGATACCATCATAGCAAGAGGGAAATCTTCAAACAAACCGCTGGTCGTTGCTGGCTGCGTCCCTCAAGGAAGTCGAGCTTTGAAAGAGCTCGAAGGGATCAGCGTCGTTGGAGTCCAGCAAATCGATCGTGTTGTTGAAGTTGTCGAGGAGACTTTGAAAGGTCATGAAGTCCGCCTTTTGACCCGCAAGACTTTGCCAGCACTTGACCTTCCCAAGGTGAGAAAGAACAAGTTCGTCGAGATTCTTCCTATTAATGTTGGTTGTTTAGGTGCTTGCACTTATTGCAAGACAAAGCATGCCCGGGGTCACTTAGGGAGTTACACTATAGAGAGCCTTGTAGGGCGCACAAAATCTGTCATATCTGATGGAGTTAAAGAGGTATGGCTCAGCAGTGAAGACACTGGAGCATATGGTCGTGACATCGGTGTCAATCTTCCAACTTTATTGAATGCCTTAGTAGCAGAACTCCCACCCAATGCTAGCACGATGCTCCGTATTGGAATGACCAATCCACCCTTTATCCTTGAGCACTTGAAAGAGATAGCAGAGATTTTGCGACATCCTAGTGTGTACTCCTTTTTGCACGTGCCAGTTCAGTCTGGAAGTGATACTATTCTGACTGCAATGAATCGGGAATATACTGTGAGCGAGTTCAGGACTGTTGTAGATACCTTGACAGAGCTTGTGCCGGGGATGCAGATTGCCACCGACATAATATGTGGATTTCCTGGTGAAACTGATGAAGATTTTGCACAAACTGTCGACCTTGTTAAAGAGTACAAATTCCCTCAAGTTCATATTTCGCAATTTTACCCTCGACCAGGGACCCCAGCTGCAAGGATGAAGAAGGTTCCAAGTAATGTGGTGAAGAGAAGAAGCCGTGAACTTACAAACGTCTTTGAATCCTTCACCCCATATACTGGGATGGAAGGCAAAGTGGAAAGAATTTGGATTACTGATATTGCATCTGATGGAGTTCACTTGGTTGGTCATACGAAGGGATATATACAAGTTCTTGTAACTGCTCCAGAGCATATGCTGGGAACTTCAGCTATGGTTAAGATAACATCCGTGGGAAGGTGGTCAGTTTTTGGGGAAGTAATTGAGACGGTCAACCCTGTAAGAGATGTCAATAAAGCTTCAAGCAAGGAGGCTCCTAAACAGGATATGCGTTCTCTATGCTACAACCCAGCAGCGAATACCGTTGGATTATCAGAAGCGCCGGAATCCTGTGCATGTGGAAATGACAGCTGCTGTAGTCAGAGTACTCCTCTGGAGAAGAGTGAAAACTCAAGAGGCGCTGTAGTGCAACAGAATCAAAACAGTAGAAGTTTCATTGGATGGGTACTGAGGAAGCGGAAGCATTTACACAGAAGGGTAGAGAGTGAGCTTGCATCAGGATCTGTTATAAAGCAAGGGACTAATGGGAGCCTGAAGAGGTGGGACTTTGTTGATAAGGCTCTTTTTGGTGGGATTTCTATCAGCATCTTGATGATTATTGTTGTAGTATTTGTTCTTACGTCTAGTGTATGGTCCCAGTAA 1890 0.4577 MEDIEDLLIDSATGTPPGFRLPVAAVGTNTKNKKNHHLRNHKLHTNHDLRSSSDASIPGTQTIYIKTFGCSHNQSDSEYMAGQLSAFGYSLTDYPDQAHLWLINTCTVKSPSQSAMDTIIARGKSSNKPLVVAGCVPQGSRALKELEGISVVGVQQIDRVVEVVEETLKGHEVRLLTRKTLPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTIESLVGRTKSVISDGVKEVWLSSEDTGAYGRDIGVNLPTLLNALVAELPPNASTMLRIGMTNPPFILEHLKEIAEILRHPSVYSFLHVPVQSGSDTILTAMNREYTVSEFRTVVDTLTELVPGMQIATDIICGFPGETDEDFAQTVDLVKEYKFPQVHISQFYPRPGTPAARMKKVPSNVVKRRSRELTNVFESFTPYTGMEGKVERIWITDIASDGVHLVGHTKGYIQVLVTAPEHMLGTSAMVKITSVGRWSVFGEVIETVNPVRDVNKASSKEAPKQDMRSLCYNPAANTVGLSEAPESCACGNDSCCSQSTPLEKSENSRGAVVQQNQNSRSFIGWVLRKRKHLHRRVESELASGSVIKQGTNGSLKRWDFVDKALFGGISISILMIIVVVFVLTSSVWSQ* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2453 629 SFLD B12-binding domain containing 141 408 - -
Dod03g2453 629 Pfam Radical SAM superfamily 201 373 IPR007197 GO:0003824|GO:0051536
Dod03g2453 629 SUPERFAMILY Radical SAM enzymes 184 418 - -
Dod03g2453 629 CDD Radical_SAM 198 402 - -
Dod03g2453 629 ProSiteProfiles TRAM domain profile. 423 485 IPR002792 -
Dod03g2453 629 TIGRFAM MiaB-like-B: MiaB-like tRNA modifying enzyme, archaeal-type 63 484 IPR006466 GO:0035598|GO:0035600
Dod03g2453 629 TIGRFAM TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 62 479 IPR005839 GO:0006400|GO:0016740|GO:0051539
Dod03g2453 629 SMART MiaB 194 418 IPR006638 GO:0003824|GO:0051536
Dod03g2453 629 ProSiteProfiles Radical SAM core domain profile. 190 422 IPR007197 GO:0003824|GO:0051536
Dod03g2453 629 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 61 169 IPR013848 GO:0035596|GO:0051539
Dod03g2453 629 Pfam Uncharacterized protein family UPF0004 63 141 IPR013848 GO:0035596|GO:0051539
Dod03g2453 629 PANTHER RADICAL SAM PROTEINS 1 518 - -
Dod03g2453 629 ProSitePatterns Methylthiotransferase radical SAM domain signature. 198 218 IPR020612 GO:0051539
Dod03g2453 629 Gene3D tm_1862 like domain 192 422 IPR023404 -
Dod03g2453 629 Gene3D - 62 181 IPR038135 -
Dod03g2453 629 SFLD Radical SAM 141 408 IPR007197 GO:0003824|GO:0051536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2453 K15865 - gmx:100798865 971.459