Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2318 ATGGGTGTACCCTCATTTTACAGGTGGCTAGTTGACAAATATCCAAAGGTGGTGGTAAGAGCTATAGAAGATGTGGACACCGCCATGATCCCAAACCCAAATGGCTTAGAGTTTGATAATTTGTACCTTGACATGAATGGGATTATCCACCCATGTTTTCATCCAGATGATGATCACAACAGTTCAACGCCGACAACGTTCGAAGATGTTTTCAAGAATATCTTTAGCTACATTGATCGGCTTGTCAGTATTGTTAGGCCTTGCAAGCTCTTGTACATGGCCATTGATGGAGTAGCTCCAAGGGCTAAAATGAACCAGCAAAGAGCAAGGCGTTTCCGAACAGCAAAGGACAACGACATACGTGAGGCTGAAGACGACAGGCTGAGGAAGCAATTTGAAATGGAAGGCAAACAAATTCTTCCTAAACAAGAATCTGAAGTACCAGATTCCAATATAATAACACCGGGAACAGAGTTCATGCATGAACTCTCAAAGGCACTTCAAAGCTACATCTCTTCAAGGATAGCTTGTGATTCGTTATGGAGGGATATCATGGTAATTCTCTCTGATGCTAATGTTCCGGGTGAAGGAGAGCAAAAAATTATGTCCTACATTCGGAGACAGCGAAGTCTCCCTGAATATGATCCAAATACAAGACACTGTTTATATGGCTCGGACGCCGATCTCATAATGCTCGCGCTTGCAACGCACGAGCCACATTTTTCAATATTAAGAGAGGTGCAGCAGCCTCAAGTTGAATTTAAGACATTTGAGTTTTTGCACATTTGGTTACTGAGGGAGTATCTTGAGCTTGACATGATTGTACTAGATCCGCCCAAAAATGACAGCATAGATTTTGAGCGGATAATTGATGATTTCATCTTCATGTGCTTTTTTGCTGGAAATGATTTTCTACCCCATATGCCATCATTGGAAATTCACGAGGGGGCAATTGACTTATTAATGGATGTTTACAAGAAACAGTTCAATAAAATTGGAGGATATCTTGTGGACATGAGCAGGGTTGCGGAGAAAAAGGCTGCTTTTTTAAAACTTTCAAGAGTTGAAAAATTTATATTAATGGTTGGAGCATATGAAGAGAAGATTTTCAAGAAAAGATCAGAAATAAGAGAGAAGAAATTGAGAAGGCTCATTAGAGCTCATGAGGAAGCTAAACAAGTACAAGATAATGTAGCCTTTTACTCAGATCTTGACAAGGAATGTAGTTCTGATTGCACTCTTGTTATTGACAAGGCAAGGGTTTCTTGTAATTCCTCTGCTGAAATTTTGCAGAATACAAAAGATTTGAAAGAGCAAGTAAACCAATGTATTAGACAGAAATCAGACTTGTTTAAGAGTGGAGAGTTCCTAATGGACAAGATAAAACTGGGGACTGCTGGCTTTAAAGAAAGATACTATAAGGAGAAGTTTTCAGTGGAAGGCCACACTGATATTGAGTCCAAACGGAAAGAAATAGTTCAGAAGTACACAGAGGGATTGGTGTGGGTACTTCAATACTATTTTTCTGGGGCAGCTTCGTGGACCTGGTTTTATCCATATCATTATGGTCCATTTGCTTCCGACCTAAAAGGCATGGCTCAAGTGAGATTTAATTTTGAGAAAGGTGTTCCATTCTTGCCTTTTGATCAACTTTTAAGTGTTCTGCCCCCAGGGAGTGCTCATGCACTTCCTAATGCATACGCACAATTAATGTTGGATGAGCAATCTCCAATATTCGAGTATTATCCTCATGATTTTGAAGTTGACATAGAGGGGAAGCGATTCTTGTGGCAGGGTATTTGCAAACTTCCATTCATAGATGAAAGATTGCTTTTGGCAGAAACCAGGAAATTGAAGAGACGATTATCTGATAATGAAGAGGACAGAAATTCAGTCAAAATTGATAACTTGTTTGTTCGAAGTACCAGCAAGTTGGGAGCGAAAATTTGCTCCCTTTCACCTCAATCAAACCCGTCTTTTAAGTTGGAGTCAAGCATAAGTGACGGCATTTCGGGTGTCCTAAGTCTTTGCCGTGAAGGATATGAGAAGCCTTGCTCGGGGATCAAGATCTGTGACAATGAACAAAAAGAAGATCTAGTCTTATGCATAGGTTATGAACTTCCAGTTGGTAGTCATTGTCATGTTCCGCGCTTACTATCTGGCGTTAATCTTCCAGCGAAGACAATCTTTGAGGTTGACATTATGGAAACAGAACTCTGGCATGAACGCCAGAGACCAGGTTCCTATGGGAGTGGTGCAAGTAGTTGGGGTAGTGCTTCAAAGTTCCCTTCAAAGCCAGTTAGTCAAGATAATACAAGAAGCTTCTCATCAAATTTATCTACTGAAGTCATACACAAAGATGCTGGTGGTGTTGGATGGGGTTCAGGTAGAGGCATTGCTGTGAGAGAGACAAGGCCCCAAAACTACATGGATAGCTTTAGGCAACTAAGAACATCAGAGCCTACTCAGCCTAGTCTAGTGCCAAGGCCTATTGGTAGAGCTCAGTTTCGGTCACCCCAAACTAATTTCACAAATGTGTCCAAAAATGTCTCTTACCAAGGTTCACAATCTGGGACTCGGCCTTATGTTTGGGGACGTGGTATACCTCAGCATGGTTCTAGTAGTTCAAGTGCTTGGAGGAGTGTTTCTGCTGACAGCTCTATGAGGCCTCAGTGGAATAGTGCAAAGGGTCAGCAAGATAAAGAATGA 2709 0.4127 MGVPSFYRWLVDKYPKVVVRAIEDVDTAMIPNPNGLEFDNLYLDMNGIIHPCFHPDDDHNSSTPTTFEDVFKNIFSYIDRLVSIVRPCKLLYMAIDGVAPRAKMNQQRARRFRTAKDNDIREAEDDRLRKQFEMEGKQILPKQESEVPDSNIITPGTEFMHELSKALQSYISSRIACDSLWRDIMVILSDANVPGEGEQKIMSYIRRQRSLPEYDPNTRHCLYGSDADLIMLALATHEPHFSILREVQQPQVEFKTFEFLHIWLLREYLELDMIVLDPPKNDSIDFERIIDDFIFMCFFAGNDFLPHMPSLEIHEGAIDLLMDVYKKQFNKIGGYLVDMSRVAEKKAAFLKLSRVEKFILMVGAYEEKIFKKRSEIREKKLRRLIRAHEEAKQVQDNVAFYSDLDKECSSDCTLVIDKARVSCNSSAEILQNTKDLKEQVNQCIRQKSDLFKSGEFLMDKIKLGTAGFKERYYKEKFSVEGHTDIESKRKEIVQKYTEGLVWVLQYYFSGAASWTWFYPYHYGPFASDLKGMAQVRFNFEKGVPFLPFDQLLSVLPPGSAHALPNAYAQLMLDEQSPIFEYYPHDFEVDIEGKRFLWQGICKLPFIDERLLLAETRKLKRRLSDNEEDRNSVKIDNLFVRSTSKLGAKICSLSPQSNPSFKLESSISDGISGVLSLCREGYEKPCSGIKICDNEQKEDLVLCIGYELPVGSHCHVPRLLSGVNLPAKTIFEVDIMETELWHERQRPGSYGSGASSWGSASKFPSKPVSQDNTRSFSSNLSTEVIHKDAGGVGWGSGRGIAVRETRPQNYMDSFRQLRTSEPTQPSLVPRPIGRAQFRSPQTNFTNVSKNVSYQGSQSGTRPYVWGRGIPQHGSSSSSAWRSVSADSSMRPQWNSAKGQQDKE* 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2318 902 PANTHER OS11G0157000 PROTEIN 1 755 - -
Dod03g2318 902 MobiDBLite consensus disorder prediction 748 774 - -
Dod03g2318 902 Gene3D - 1 140 - -
Dod03g2318 902 Gene3D - 144 349 - -
Dod03g2318 902 Gene3D - 530 632 - -
Dod03g2318 902 MobiDBLite consensus disorder prediction 845 860 - -
Dod03g2318 902 CDD PIN_XRN1-2-like 41 269 - -
Dod03g2318 902 Pfam XRN 5'-3' exonuclease N-terminus 1 246 IPR004859 GO:0003676|GO:0004527
Dod03g2318 902 Coils Coil 377 397 - -
Dod03g2318 902 MobiDBLite consensus disorder prediction 845 902 - -
Dod03g2318 902 PANTHER 5'->3' EXORIBONUCLEASE 1 755 IPR027073 -
Dod03g2318 902 PIRSF Exonuclease_Xrn2 247 421 IPR017151 GO:0004534|GO:0005634|GO:0006139
Dod03g2318 902 PIRSF Exonuclease_Xrn2 402 902 IPR017151 GO:0004534|GO:0005634|GO:0006139
Dod03g2318 902 PIRSF Exonuclease_Xrn2 1 253 IPR017151 GO:0004534|GO:0005634|GO:0006139
Dod03g2318 902 MobiDBLite consensus disorder prediction 744 774 - -
Dod03g2318 902 Pfam Xrn1 helical domain 284 734 IPR041412 -
Dod03g2318 902 MobiDBLite consensus disorder prediction 869 895 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2318 Dod-Chr3 53923600 53930996 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2318 - - gsj:114379404 1158.67