Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2260 ATGGACATATACCTCTCTCCCTCTCCACCTTCACATTCCAGTTCAATCGTCAGATTGGCAAACTCAAAATCACCCATCTCAGAACCTTCTTTCTTCAAGCCCAAAACCCACTTCCCAAGACCGCTTTTTTCTCCTTCTTTCTCTTCTCCATGCTTATTGAACAGCCTCACATACAACAAGAAGCAGTTTTTTCATGAGAATAGTAATACTAGGTTCACACATGGGAACAGGGTTGATTTTAGGACTTGGTCCATTGCTGGATTTGATTATGGGAGCTTTGAGGGCCCTCAATCTGTGCTTGAGGCTGCTGCAGTTTTGACAGCGATCATTGTTGTCCATGAGAGTGGCCACTTCCTTGCTGCTTCACTCCAAGGGATCCATGTGAGTAAATTTGCTGTTGGGTTTGGTCCAATTTTGGCAAAGTTCAATGCAAAAAATGTGGAGTATTCCATTAGAGCTTTCCCTCTTGGTGGTTTTGTGGGGTTCCCTGATAATGACCCTGAGAGTGATATACCTGTTGATGATGAGAATTTGCTTAAGAATAGGCCAATATTGGATAGGGTCATTGTGGTCTCAGCTGGTGTTGTTGCCAACATAGTTTTTGCTATCGCCATTATATTTGCTCAGGTTCTCACCGTTGGTTTGCCTGTTCAAGAGGTTTTCCCTGGGGTTATGGTTCCTGATGTTAGACCCTTTTCAGCTGCTTCTAGAGATGGTTTGCTTCCTGGGGATGTGATCCTTGAGGTTAATGGGAATCAGTTCCCAAAACCAGGTCCTAATGCGGTTTCTGAAGTTGTTGATGTCATCAAGAAGAGCCCCAGGAGATATGTGTTGCTTAAGATTAAGAGGGGGGAGCAGGATTTTCAAATTGGGGTCACCCCAGATGAGAATTTTGATGGAACTGGTAAAATTGGTGTTCAGCTATCACCAAATGTGAAGATTGACAAGGTTAGCCCAAAGAATCTGGAGGAAGCCGTAACCTTTACTGGGAAAGAATTTTGGGGCCTTGCATCTAATGTTTTGGATGGCCTAAAGCAGACATTTTTGAACTTCTCTCAAACAGCTGGTAAGGTTTCAGGCCCTGTAGCCATTATTGCTGTTGGTGCAGAAGTTGCAAGGTCAAACATTGATGGTCTCTACCAATTTGCTGCCATACTCAATATCAACCTCGCGGTTATTAACCTTCTTCCATTACCTGCTTTGGACGGGGGTACATTGGCATTGATCCTCATTGAGGCAGCCAGGGGTGGGAGAAAGCTACCTCTGGAAGTGGAGCAAAGGATCATGTCATCAGGGATTATGTTTGTTATACTTCTGGGGTTGTTTCTTATTGTTCGTGATACCCTAAACCTTGATTTCATCAAAGATATGTTGTAA 1377 0.4372 MDIYLSPSPPSHSSSIVRLANSKSPISEPSFFKPKTHFPRPLFSPSFSSPCLLNSLTYNKKQFFHENSNTRFTHGNRVDFRTWSIAGFDYGSFEGPQSVLEAAAVLTAIIVVHESGHFLAASLQGIHVSKFAVGFGPILAKFNAKNVEYSIRAFPLGGFVGFPDNDPESDIPVDDENLLKNRPILDRVIVVSAGVVANIVFAIAIIFAQVLTVGLPVQEVFPGVMVPDVRPFSAASRDGLLPGDVILEVNGNQFPKPGPNAVSEVVDVIKKSPRRYVLLKIKRGEQDFQIGVTPDENFDGTGKIGVQLSPNVKIDKVSPKNLEEAVTFTGKEFWGLASNVLDGLKQTFLNFSQTAGKVSGPVAIIAVGAEVARSNIDGLYQFAAILNINLAVINLLPLPALDGGTLALILIEAARGGRKLPLEVEQRIMSSGIMFVILLGLFLIVRDTLNLDFIKDML* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2260 458 CDD PDZ_metalloprotease 211 294 - -
Dod03g2260 458 Pfam Peptidase family M50 103 439 IPR008915 GO:0004222|GO:0006508
Dod03g2260 458 Pfam PDZ domain 226 283 IPR041489 -
Dod03g2260 458 PANTHER REGULATOR OF SIGMA-E PROTEASE RSEP 35 458 IPR004387 GO:0004222|GO:0006508|GO:0016021
Dod03g2260 458 PANTHER MEMBRANE METALLOPROTEASE ARASP2, CHLOROPLASTIC-RELATED 35 458 - -
Dod03g2260 458 Gene3D - 215 309 IPR036034 GO:0005515
Dod03g2260 458 SMART pdz_new 211 285 IPR001478 GO:0005515
Dod03g2260 458 CDD S2P-M50_PDZ_RseP-like 99 450 - -
Dod03g2260 458 ProSiteProfiles PDZ domain profile. 213 284 IPR001478 GO:0005515
Dod03g2260 458 SUPERFAMILY PDZ domain-like 183 286 IPR036034 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2260 - - lang:109351773 711.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2260 03 52941279 52943666 Dod03g2260 03 52941279 52943666 ECH