Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2254 ATGAACACCGCACAAAACATGCGAGTGGCATTCATGATAGCCACCGTAGCAACTATCTGCATCTTCCTCACCGCACGGAACCGTAGACGAAGGCGGCGTAGTGACCGCAACAACCACTCTCCTTCGACTTCGTGTTATTTGCATTCAGAAGCGAAGAAGCCACAGAGCCTATTTAAGCGCGTCTTAGCGGATAACTCCTACACTCCGTTTAAGCACTTGAAGAACCACAACGAGTCTTCTAGCGACGAGAATGCTTCGAATTCACATCCATTTGAGGCAGAGATTATGGAGTTGTTAAAAAATCCTCTGCTTGAAATTGAACTTAGTACTGAAATCCTGGACTTTGAAATGAATGATTCATATGTTTGGGTCAATACAGAGCTGCAGTTACAGGAACTGGCCAATGTATTAAGCAATGAAAGATTCTTTGCTGTAGACACAGAGCAACATAGCTTAAGATCTTTCCTGGGCTTTACAGCATTAGTTCAGATTTCTACATTGAATAAAGATTATTTGGTTGACACAATTGCCCTGCATGATTTTATGGGGATTCTTTGCCCAGTTTTTGCCAATCCTTCAATTTGTAAAGTGTTCCATGGAGCTGACAATGATGTTGTGTGGCTACAGAGGGACTTCCATATATACATCGTCAATTTATTTGATACTTCAAAGGCATGCGAGGTGCTGTCAAAACCACAGAAATCACTTGCTTATTTACTCGAAACTTACTGCAGTGTGACAACAAATAAATTATTACAGCGTGAAGATTGGAGACAGCGCCCCCTCTCAGCAGAAATGGTTCAATATGCACGAATAGATGCTCACTATCTGTTGTATATTGCAAACTCTTTGATCAGTGAGCTCAAACAACTGGACAACGAAAACTCTTGTGCCGATGACAAGTTCCATTTTGTTCTCGAGGCTAGTCGGCGTTCAAACATAATTTGTTTGCAACTTTTCACAAAAGAGGTAGAAGCTTCTCCTGGTGAATCTGCTGCATTATCTTTATTTTCACGTCATTTGAGCGGTCAAGGTTTTTCTTCAGTTTCTGATGAAACCAAGTTTCAGAATATTGTGAGGCAGCTGTGTGCGTGGAGAGATCTGATGGCTCGCATTCATGATGAGAGCTTAAAATATGTACTGTCAGACCAGGCAATTGTTGCTTTGGCAAGTCAGCCTTCAGGGAGTCAATCTGAAATATACAATACCATAGCTCGGGCTGATAACAATGGGGAAATAGGTCTGAATTCTTTCACCACTTCCCCGTCCCCTGTTGTTTGCGGCCATGTGAGTGATATCAGTCATCTGCTTGCTGACAAGTTGGTTAACCATGGTGATATTTATTCAGCGATTCTTCAGAAGCGCCTAGGTCCCAATGGGAGTTGTCCACTTTCTATATTTAATTATGTTTTGTTGGTTAACAGTAACTTGAAACCTACTTTATCCTATAAGCCCTCTGGCCCAAAAAATTCTAGACAATTTTCCCGCAAGGCTTCCCGAGATTTATTTGTTCAGAAATTCTCATGTAAATCTCCTGTTTATCATAATTGCCGGATATTTGCTAATGATGGGAGGCTGCTTTGTTATTGTGATCGGAAGAAGCTCGAATGGTACATTAGTCGGGATCTCGCAAAACTTGTTGATGAGGATCCACCAGCTATAATGCTTCTTTTCGAACCCAAAGGCCGTCCAGAGGACGAAGACAATGATTTTTATATCCAGAGCAAGAAAAATATATGTGTTGGGTGTGGTGAAGGAAATCACTACTTACGGTATCGAATAATCCCATCATGTTACAGAATGCATTTCCCTGAGCATTTGAAAAGCCATCGTTCTCATGATATTGTCCTCCTCTGCGTGGACTGCCATGAAGTTGCCCATGCTGCTGCGGAGAAGTATAAGAGAAAAATAGCTGCTGAATTTGGGATTCCTCTGTATGTTCGTAGGGTAATACATCCCGTACAACAAACTGATGTACAGATTGAGGGAGGTGTATCTCCATTAGAGTTACGAACAGCTGCTATGGCTCTTCTACGTCATGGACCAAGAATGCCTCAGAATCGCCGTGAAGAACTGACTGAGATTGTGAAGAGATATTATGGAGGAAGAGAGATATCTGAGGAAGATCTAGAAAGAGCTTTGATAGTTGGCATGAGTCCTCATGAGAGAAGACGTTTTGAGAAGAAGAGAGGTTTTTCTTTAAAACACATGGGAAGTACTACTGCAGTGTCAGAACAGGAAAATCATGCTGATTGCACAACTAGATTAGGGGATGTAGACGTATCCAAAGTTGATTCTCTTGATGGTTCAAATGCAATTGAAGAAACAATAAGTGAAGTAGATAGAGAACTTTTTATGGTAAAAGATGATTTAGGAAACCATTCTATAGCCTCTGATATTGCAGTTGATGGAGCTGTCTCTGCTACTGCATATGGAAATACAAGCACAGTTAAAACTGTGGATTATAATGAAAGCAGTGAGACTGCTGCAAATGTTGGTGATAGCTGTCTGAGCGGAAAACAACCAAATGGAATTAATGAATTATCCTATAACCCCAAAGATGAAGAGTCGACACAAGCTAAGCATAATTCAAAACTGTCCCTCTTGGGACATGGACCACATGGGCAACAAGTTGTAGAACATATAATGGAGGAATACGGTGAAGATGGCATTCGACAGTTTTGTCAGAGATGGAGACAAGTATTTGTGGAAGCTGTAAATCCGCGTTTTCTTCCTGGTGGTTGGGATGTAAAACACAGGCTTTGA 2766 0.4136 MNTAQNMRVAFMIATVATICIFLTARNRRRRRRSDRNNHSPSTSCYLHSEAKKPQSLFKRVLADNSYTPFKHLKNHNESSSDENASNSHPFEAEIMELLKNPLLEIELSTEILDFEMNDSYVWVNTELQLQELANVLSNERFFAVDTEQHSLRSFLGFTALVQISTLNKDYLVDTIALHDFMGILCPVFANPSICKVFHGADNDVVWLQRDFHIYIVNLFDTSKACEVLSKPQKSLAYLLETYCSVTTNKLLQREDWRQRPLSAEMVQYARIDAHYLLYIANSLISELKQLDNENSCADDKFHFVLEASRRSNIICLQLFTKEVEASPGESAALSLFSRHLSGQGFSSVSDETKFQNIVRQLCAWRDLMARIHDESLKYVLSDQAIVALASQPSGSQSEIYNTIARADNNGEIGLNSFTTSPSPVVCGHVSDISHLLADKLVNHGDIYSAILQKRLGPNGSCPLSIFNYVLLVNSNLKPTLSYKPSGPKNSRQFSRKASRDLFVQKFSCKSPVYHNCRIFANDGRLLCYCDRKKLEWYISRDLAKLVDEDPPAIMLLFEPKGRPEDEDNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRMHFPEHLKSHRSHDIVLLCVDCHEVAHAAAEKYKRKIAAEFGIPLYVRRVIHPVQQTDVQIEGGVSPLELRTAAMALLRHGPRMPQNRREELTEIVKRYYGGREISEEDLERALIVGMSPHERRRFEKKRGFSLKHMGSTTAVSEQENHADCTTRLGDVDVSKVDSLDGSNAIEETISEVDRELFMVKDDLGNHSIASDIAVDGAVSATAYGNTSTVKTVDYNESSETAANVGDSCLSGKQPNGINELSYNPKDEESTQAKHNSKLSLLGHGPHGQQVVEHIMEEYGEDGIRQFCQRWRQVFVEAVNPRFLPGGWDVKHRL* 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2254 921 Coils Coil 281 301 - -
Dod03g2254 921 Gene3D - 51 325 IPR036397 GO:0003676
Dod03g2254 921 PANTHER PROTEIN RRP6-LIKE 3 2 919 - -
Dod03g2254 921 Pfam 3'-5' exonuclease 121 288 IPR002562 GO:0003676|GO:0006139|GO:0008408
Dod03g2254 921 Gene3D HRDC domain 347 446 IPR044876 -
Dod03g2254 921 SMART 35exoneu6 121 289 IPR002562 GO:0003676|GO:0006139|GO:0008408
Dod03g2254 921 SUPERFAMILY HRDC-like 355 404 IPR010997 GO:0000166|GO:0044237
Dod03g2254 921 Pfam HRDC domain 356 399 IPR002121 GO:0003676
Dod03g2254 921 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 2 919 IPR045092 GO:0000175|GO:0000467
Dod03g2254 921 SUPERFAMILY Ribonuclease H-like 53 295 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2254 Dod-Chr3 52829799 52840573 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2254 K12951 - gmx:100791485 1395.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g2254 03 52829799 52840573 Dod03g2254 03 52829799 52840573 ECH