Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dod03g2239 | ATGCATCCTTCGCGTCCTCCACCACTTCTTGCTCTGCTCCGGCAAGAATCCGGCCAATGCAGCGACGTACCGCATGCTCCAGACGCATGCATGCCCTGCCATCTCCTCCTCCGCCGGCGCCGGGTCCCGCCAGTGGAGCCTGGCCGTAAAGCGGTGGAGGAGCTTGAAACGCCGCCGCCACCTGCGTTTCACACCCATGAATTGGATTCTGATTTGGTTTCCTTGAAGATCAGCTTGTTGGGTGACTGCGAAATTGGAAAAACCAGCTTTTTGGTGAAATATGTTGGGGATGAGAACGAGAAGCAAGGGCAACAGAGGAAAGGGTTGAACCAGATGGACAAAACTTTGGTTGTGAAAGGGGCACGTATTTCGTATTGTATCTGGGAAGTTCAAGGTGATGCAAAATCAGAAGATCAAATTCCAGTGGCTTGTACAGACTCCGTGGCAATTTTAATCATGTTTGATCTAACAAGTCGATGCACATTAAACAGCGTGCCACGATGGTACAAAGAAGCTAGGAAATGGAATCAGACTGCAATTCCGGTGTTGATAGGAACCAAGTTTGATGATTTCATTCAGCTCCCCATTGATCTGCAATGGACCATCGCCAGTCAGGCAAGAACATATGCAAAGGCCATCAATGCCACTTTGTTCTTCTCCAGTGCAACCTACAACATCAACGTGAACAAGATCTTCAAGTTCATCACTGCCAAACTCTTTGACCTACCATGGACAGTGGAAAGAAATCTAACTGTTGGGGAGCCCATCATTGATTTCTGA | 780 | 0.4846 | MHPSRPPPLLALLRQESGQCSDVPHAPDACMPCHLLLRRRRVPPVEPGRKAVEELETPPPPAFHTHELDSDLVSLKISLLGDCEIGKTSFLVKYVGDENEKQGQQRKGLNQMDKTLVVKGARISYCIWEVQGDAKSEDQIPVACTDSVAILIMFDLTSRCTLNSVPRWYKEARKWNQTAIPVLIGTKFDDFIQLPIDLQWTIASQARTYAKAINATLFFSSATYNINVNKIFKFITAKLFDLPWTVERNLTVGEPIIDF* | 260 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dod03g2239 | 259 | SMART | rho_sub_3 | 77 | 241 | IPR001806 | GO:0003924|GO:0005525 | |
| Dod03g2239 | 259 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 75 | 250 | IPR027417 | - | |
| Dod03g2239 | 259 | CDD | Spg1 | 75 | 256 | IPR017231 | - | |
| Dod03g2239 | 259 | PRINTS | Transforming protein P21 ras signature | 75 | 96 | - | - | |
| Dod03g2239 | 259 | PRINTS | Transforming protein P21 ras signature | 116 | 138 | - | - | |
| Dod03g2239 | 259 | PRINTS | Transforming protein P21 ras signature | 177 | 190 | - | - | |
| Dod03g2239 | 259 | PRINTS | Transforming protein P21 ras signature | 217 | 239 | - | - | |
| Dod03g2239 | 259 | PANTHER | MONOMERIC G-PROTEIN | 62 | 258 | - | - | |
| Dod03g2239 | 259 | ProSiteProfiles | small GTPase Rab1 family profile. | 69 | 259 | - | - | |
| Dod03g2239 | 259 | Pfam | Ras family | 76 | 239 | IPR001806 | GO:0003924|GO:0005525 | |
| Dod03g2239 | 259 | PANTHER | - | 62 | 258 | - | - | |
| Dod03g2239 | 259 | Gene3D | - | 66 | 249 | IPR027417 | - | |
| Dod03g2239 | 259 | SMART | rab_sub_5 | 75 | 242 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dod03g2239 | Dod-Chr3 | 52492256 | 52496111 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Dod03g2239 | K07976 | - | gmx:100780638 | 373.244 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Dod03g2239 | 03 | 52492256 | 52496111 | Dod03g2239 | 03 | 52492256 | 52496111 | ECH |